Protein Info for SO1694 in Shewanella oneidensis MR-1

Annotation: FAD-binding protein (NCBI ptt file)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 894 PF13385: Laminin_G_3" amino acids 39 to 168 (130 residues), 48.6 bits, see alignment E=2.1e-16 PF01565: FAD_binding_4" amino acids 385 to 519 (135 residues), 95.6 bits, see alignment E=4.2e-31 PF08031: BBE" amino acids 850 to 893 (44 residues), 45.4 bits, see alignment 1.3e-15

Best Hits

KEGG orthology group: None (inferred from 100% identity to son:SO_1694)

Predicted SEED Role

"probable oxidoreductase"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q8EGB1 at UniProt or InterPro

Protein Sequence (894 amino acids)

>SO1694 FAD-binding protein (NCBI ptt file) (Shewanella oneidensis MR-1)
MKPPQMTQAQLSTQPTELTQKTAHKHNLVKTLVQDAGTLNVFTFQAWVKTHQGGVVFQYY
SQTNNTGFTININALGHIETLVNSQLLQIETISTLGNLNDGYWHLLSITYQYHELTCYID
GEEIHLQQHSIPLSDDRKLKLTNETSTLFDGEIVNINLIEQCLTKHQILDYYLQPQHQIT
LTDNNLYIYPKNQIKPSTNFHPNFATRQEVMLIIFNDTDYNFSKQNLNTNNFKKQLPHII
PAHECCAYIIESNFGQWPHFIYLVNYHSEESTNITLSFDILKSLTPNRSHIKLQLSNELE
FDCFISQSTSSRLTAEIRISENVVTRQVTHFMRFINEVRSHIPSENIITDGQYYAEQDFW
VSTGQQMLAYEKACQLFNRRLQKKPLAIIKCRTRQDVKIVYKTAVDYHLAISVRSSGHDH
EGESGETNSIVLDLELMNDIELDPISGIVAIEPGCTIGNITSYLAQKGLMLPHSTSASHA
LAGFIMGGGWGPWCRKYGMCCEGLVQAEIVLGVGETQVVSAANKPELLWALKGGGGLSYG
IVTRFFVQTFALPPSLLKFELEWNPYLQDGQQLQQTTPTLGLLERWEQLILADNHPSLLG
TNLKIQAKSAIVEEQKRPLASSVPETEDPMFAKHNCIMYGYWEGNPASLAHFIKTQFSEV
GLKPSRVQIDAMGGLTQAYGDELMESWNRETIQDLQPILNHRMTELINDKDIQLYKNQRQ
HAQDLLRPAPHKVTSRLAHSQGLKQGHIALIESLTSSQLIEDNRQLGLFTYVTLSAITGD
FYRTLGDAKKTQSAFAFKDHAYIVQFQAWWNNELQEQVLMQANPVYTRVNRALDWIDSCR
DATIANSSGAFINFKDNTIPTARYFGKNYPLLQQVKASYCQDPLNHFRSRKSII