Protein Info for SO1552 in Shewanella oneidensis MR-1

Annotation: TPR domain protein (NCBI ptt file)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 720 signal peptide" amino acids 1 to 22 (22 residues), see Phobius details transmembrane" amino acids 475 to 494 (20 residues), see Phobius details PF13424: TPR_12" amino acids 242 to 303 (62 residues), 39.4 bits, see alignment 2e-13

Best Hits

KEGG orthology group: None (inferred from 100% identity to son:SO_1552)

Predicted SEED Role

"FIG00920775: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q8EGP6 at UniProt or InterPro

Protein Sequence (720 amino acids)

>SO1552 TPR domain protein (NCBI ptt file) (Shewanella oneidensis MR-1)
MHKFIVIFVTLLISISVQTLAADLEIEEIELRETPQKMYDRLNQSISFPISFKNREQFER
AAQEQGYSPDEFEHILQLLARLNLEPNVKTKVEFQDANSLIELLTSIAQTPLEQATVAML
KGRYIGRTEQKYQEAIAFYNQALSHINDSVDLGSMLLKHTIHEHLGLLHLVIRQDVPALM
HFHTYRDIAYKLRNDYLIAAAESKLGHYYNKNQQLTKSLQHYSEAVRLSNRSNYPSMKTH
LQLQLAKVYRDLKQWDEALKNAHEAAAGFKKLGNDTYLSSCMTVIAMVYGEQGDWNRAID
YYLNAQQLDAKRGNYIAQGLNFHNLGQAYSHLNDNVNALKYLLMANKIFTDKQSHHYLVY
NELLIGEIAQSKQDWTLMMSHAEHALALASNLALLDEQKSALTQIALSAEKMQDQAKVIS
TQKRIIELNNTSKNTAKDPAVAASVLAEQQLKLELNMVQGKLNDAIESAKETNKLLALSG
VILTLLVIAIIALLNQRQKSRRQNESLLQLTLEEPFTHHKGYAALLRDLGPNTPHTRTTA
LALIEFRDHLMTDLNHGQYFANAITCQLASHISNSLFMPVYVIRQGLFAVRFTETVDPQQ
ALTQLQQQLDKNAFTAIFNLGFINLPLLTKTEINIAPKLLFETVQMALAGARSLPSNTCH
YVSLRALDFVPPTLFADPLFLHLEKGIERGLIRVETNAMKEDIVWPCWENNQNRHLLGNI