Protein Info for SO1535 in Shewanella oneidensis MR-1

Annotation: conserved hypothetical protein (NCBI ptt file)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 130 signal peptide" amino acids 1 to 27 (27 residues), see Phobius details transmembrane" amino acids 45 to 63 (19 residues), see Phobius details amino acids 70 to 90 (21 residues), see Phobius details amino acids 97 to 120 (24 residues), see Phobius details PF04241: DUF423" amino acids 19 to 105 (87 residues), 106.5 bits, see alignment E=3.4e-35

Best Hits

Swiss-Prot: 40% identical to Y629_STAAC: UPF0382 membrane protein SACOL0629 (SACOL0629) from Staphylococcus aureus (strain COL)

KEGG orthology group: None (inferred from 97% identity to shn:Shewana3_2892)

Predicted SEED Role

"COG2363"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q8EGR0 at UniProt or InterPro

Protein Sequence (130 amino acids)

>SO1535 conserved hypothetical protein (NCBI ptt file) (Shewanella oneidensis MR-1)
MRKGLLLLAAVSGFLAVALGAFGAHGLKAVAPPELIEVFNLGVQYHFYHTFALIAVAFAG
QWLTSRLLDWAAYLFIAGIVLFSGSLYGLALVGSKWFGPITPMGGGCFLLGWLLLAAAVW
RHKVVDGNES