Protein Info for SO1474 in Shewanella oneidensis MR-1

Annotation: conserved hypothetical protein (NCBI ptt file)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 145 PF10604: Polyketide_cyc2" amino acids 1 to 133 (133 residues), 41.5 bits, see alignment E=1.7e-14 PF03364: Polyketide_cyc" amino acids 12 to 135 (124 residues), 123.4 bits, see alignment E=7.3e-40

Best Hits

Swiss-Prot: 59% identical to PAST_ECOL6: Persistence and stress-resistance toxin PasT (pasT) from Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)

KEGG orthology group: None (inferred from 99% identity to shm:Shewmr7_2853)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q8EGW7 at UniProt or InterPro

Protein Sequence (145 amino acids)

>SO1474 conserved hypothetical protein (NCBI ptt file) (Shewanella oneidensis MR-1)
MPQISRSVLVRFSAMQMYDLVNDVESYKEFLPGCVGGKVLEFDGKTMVASVEVSKAGIRK
TFTTRNQVVPGKSIELRLENGPFKHLFGQWRFTELTEDACKVEFDLNFEFSSSLVDMAFG
KVFNDLMVSMVTAFTSRAKVIYSDK