Protein Info for SO1463 in Shewanella oneidensis MR-1

Annotation: hypothetical protein (NCBI ptt file)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1400 1506 transmembrane" amino acids 778 to 797 (20 residues), see Phobius details

Best Hits

KEGG orthology group: None (inferred from 100% identity to son:SO_1463)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1506 amino acids)

>SO1463 hypothetical protein (NCBI ptt file) (Shewanella oneidensis MR-1)
MIKGIQTVIKSDIDGSLISVLVPKFKMLLETRGAGHCMKVSDLETELMYQLSEVVSGAVE
YAQVAVLAMKATRNFSVTSTKLVELRNPDEHGQLRQPLLIFVPNELKTSSEDSFGAATFE
QIDISDAYWLAFNQVKAESPEPIKRLLDEVYFILQEKAALKLSAYQWLRYALTIKVNGFD
PSVAGAALYELGLIPDLELHQDHSMLVRKLVKNRECVQIINRSEKSAIATVYDLQLDGED
FNKRLALFLNDQENLLDSSWRKQLVVDSSNWALTFDKWRFQYEEDATDAVCLTVTEVGLP
LIPDDETDPNLQQLIGQQVLTTGQGGLKKFSVTFSVSPKPSEVNGLAKYKAQVFTQQGDF
VGLIKVGKATPKSTVTITFNKLTGIEWEEGWHYIRIQAFDENDELLPLVDDKQCPIPWGT
SSAEEAGSRINESDLFYVLPAADAEVEPIEGRKVREASLAHAKIKAEFANVIETEKFAHV
EVVETTWQDSKSKAESIVNVKFKKGSGIQIPVTTYLKNFEQKILANPMAALTWRVEIRNQ
EASESGADAVDWPIKGVESQFEKFKVAREAYFQVIHQDEKELVSVAHDHVSSSHEAYLYS
SSYLEYLAAVFQETENGHDYSTELAALLRLDSLSIVIWNYDGSYKKAMLLGPTHPLRALW
LGGWASLAEAWARQSEKVGKEIAVGTKNSLLEELALTNFPYVLPDSQGQLMVALDSIHPF
WSILSSAQEKEPQALIDKIKTAFGIKNDYQQVGKQSSTFLATKVERYLIQHPYVNCLSIN
VFNAGSAGAVAGMVLALRKKPELKHISFDIRLFVADPYATEVGADLFKLINSGEDSENEN
QLFHSAENHLQPKLSISLRASSEFEQSPDEFQSHLSMLFDVFPAQELSVVKPQADEQVAP
IYGLYQDYCIDYFDENGVVAWDRHTRHGAAKMLFGGQVSETIAKLPKMMSAITASLATGD
FSLEQVPVVRLALDSAERALLNQLHEVSDWVFTVDRNLGIEFFDHGGKDGRPDYLIDHSP
EMASSNTHNFVITSRSTTEIEALLRGTLEQHQIVPDVDKATRVLDSLRALSGRLALKLAS
NSASKSEALGLALSKLYLEYQGVFKDQVIVPLDAHLELYSDLQKADGELGADVSFKRTDL
ALFDLDASSRTIRCNLVEVKCYSEVGDLAKYESLKKSIAEQISESERVIQRHFDLMRTTP
DRPDRLVKTQKICVLLEHYLKRSERFGLLSSEIVEEAKFLLRTLEEGYKLSITRSAVIFD
FGQNSSGVEKEVGIEFHRVGRNHIDELLSAKVPEDNEHSEGTLDSLELTLPKLTSAEFLH
KERDRTVSWAELVSQAAITLPERPDASEDETIKVLPFNDEPATVLPSISQSVEEVKPVGN
PAPVVANPEEPVPGENLHIPNITTGNKVEVVPHDIVLGVNGDSAQFGLLGEVHGRKIALD
LNHTHTLSLFGVQGGGKSYTLGSVVEMATKSIPSINTLHKELASVIFHYSATQDYKPEFT
SMIVLV