Protein Info for SO1429 in Shewanella oneidensis MR-1

Name: dmaA-1
Annotation: anaerobic dimethyl sulfoxide reductase, A subunit (NCBI ptt file)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 836 signal peptide" amino acids 1 to 25 (25 residues), see Phobius details TIGR02166: anaerobic dimethyl sulfoxide reductase, A subunit, DmsA/YnfE family" amino acids 1 to 836 (836 residues), 1271.7 bits, see alignment E=0 TIGR01409: Tat (twin-arginine translocation) pathway signal sequence" amino acids 2 to 21 (20 residues), 19.8 bits, see alignment (E = 7.4e-08) PF04879: Molybdop_Fe4S4" amino acids 44 to 99 (56 residues), 37.6 bits, see alignment 2.6e-13 PF00384: Molybdopterin" amino acids 103 to 581 (479 residues), 191.1 bits, see alignment E=4.5e-60 PF01568: Molydop_binding" amino acids 710 to 828 (119 residues), 93.5 bits, see alignment E=1.3e-30

Best Hits

KEGG orthology group: K07306, anaerobic dimethyl sulfoxide reductase subunit A [EC: 1.8.99.-] (inferred from 100% identity to son:SO_1429)

Predicted SEED Role

No annotation

Isozymes

Compare fitness of predicted isozymes for: 1.8.99.-

Use Curated BLAST to search for 1.8.99.-

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q8EH03 at UniProt or InterPro

Protein Sequence (836 amino acids)

>SO1429 anaerobic dimethyl sulfoxide reductase, A subunit (NCBI ptt file) (Shewanella oneidensis MR-1)
MERRSFLKMSAAMGCAATVTGCNSGSSDVNVVPPKPPVGDEVQTWSSCLVNCGSNCPIKV
FSRDGIITRIETDHETNDEYGNHQIRACARGRSLRSRTYAPDRLRTPMKRVGKRGEAKFV
PISWDEAASTIASEIQRIASSYGNKSILKHYGTGAYYGFASSACFDRVLNLNGGFLKIYG
NYSWAQQNEAAAATGFASTSGSSLTALYDSDLFLGIGYNPSEMRQSGSGEGYDFLKALEA
NANLEVIMVDPRYTDSMAGKESQWLPIRPGTDAAFAEAIAYEMISSGWVDTHSKAFLDKY
CVGFDKASLEKLVAEFTASGDPKKTQYLPYIDVEDNYRNYILGEGKFADNGPRTPAWAAK
ICGISEANIKSVASKIMNAKAPFIVTGAGVNRHANGEQAMRACYMLSFLTGKVGQPGVSN
GALPYQGSLNRAGMSGGSNPVKESISFFTWAEAIERGHEMTARKDGIRGTADLDTPLGAD
IKAVFAINSNALINQHSDCNGTAKILEDDTKCELIVVCDCWMTASARYADILLPDTTWLE
SNDLVNDSYASGIMGYLVAMKAAVKPMWESISMFEMGRLIAAKMGKEAEYTEGKDEAAWL
EELYQKTRTNSANTDAQPAFPNSYAEAQKIGVFRAFSKTPVLALDSYINGGKAVSTPSGK
VEIYSLSMAQKGKDWIFNPNVKGDYITAIPMYQPTWEGYDDEDTKDDYPLQLMGYHTKGR
THSSYHNVPWLREAAEDAVWMNPADALGRGLRGGDKVQMWNDRGTVELPVRITPRVAPGV
VALGQGAWYQPDIARIGRSGHPIDVGGCINTLTRYQPSPFAKGNPQHTNRVQIVKA