Protein Info for SO1403 in Shewanella oneidensis MR-1
Annotation: conserved hypothetical protein (NCBI ptt file)
These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.
Protein Families and Features
Best Hits
Swiss-Prot: 100% identical to Y1403_SHEON: UPF0597 protein SO_1403 (SO_1403) from Shewanella oneidensis (strain MR-1)
KEGG orthology group: None (inferred from 100% identity to son:SO_1403)Predicted SEED Role
No annotation
Sequence Analysis Tools
PaperBLAST (search for papers about homologs of this protein)
Search CDD (the Conserved Domains Database, which includes COG and superfam)
Predict protein localization: PSORTb (Gram-negative bacteria)
Predict transmembrane helices and signal peptides: Phobius
Check the current SEED with FIGfam search
Find homologs in fast.genomics or the ENIGMA genome browser
See Q8EH28 at UniProt or InterPro
Protein Sequence (424 amino acids)
>SO1403 conserved hypothetical protein (NCBI ptt file) (Shewanella oneidensis MR-1) MKPQWQQYIQIINQVVKPALGCTEPIAAAYAAAVARTLLNDDPDSIAVQVSDNLYKNSMG VYVPGTGKIGLAIAAAAGALAGNADAGLEVLASVTPEQVAQAQALIDAAKVKVERTETDE FIYCCVTLTSGEQEAMVKICGGHTLIAEKRLNGELVFTADNAQAKATGSICDGVDINIES IYRFAEEVPFEEIQFILKASELNSKLSDEGMSKPYGLEVGRTMKNGIAAGIIGEDLLNKI VMLTAAASDARMGGANLPAMSNLGSGNQGIAATIPVVITAQCYKVSEEKLARALIMSHLG AIYIKSHYPPLSAFCGNTVTSAAASMAMVYLAGGSFEQSCFAIQNVISDSSGMVCDGAKA SCAMKVSTSSSAAVRSFLMALSSQNVSGQGIIANHVEKTIKNIGKMVLNGMSSTDVTIIN IMSE