Protein Info for SO1276 in Shewanella oneidensis MR-1

Name: gabT
Annotation: 4-aminobutyrate aminotransferase (NCBI ptt file)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

• TIGR00700: 4-aminobutyrate transaminase
  • amino acids 11 to 418 (408 residues), 530.3 bits, E=1.4e-163
• PF00202: Aminotran_3
  • amino acids 20 to 417 (398 residues), 459.2 bits, E=5.3e-142

Best Hits

Swiss-Prot: 70% identical to GABT_ECOLI: 4-aminobutyrate aminotransferase GabT (gabT) from Escherichia coli (strain K12)

KEGG orthology group: K07250, 4-aminobutyrate aminotransferase / (S)-3-amino-2-methylpropionate transaminase [EC: 2.6.1.19 2.6.1.22] (inferred from 100% identity to son:SO_1276)

MetaCyc: 70% identical to 4-aminobutyrate aminotransferase GabT (Escherichia coli K-12 substr. MG1655)
5-aminovalerate transaminase. [EC: 2.6.1.48]; 4-aminobutyrate transaminase. [EC: 2.6.1.48, 2.6.1.19]; Acetylornithine transaminase. [EC: 2.6.1.48, 2.6.1.19, 2.6.1.11]

Predicted SEED Role

"Gamma-aminobutyrate:alpha-ketoglutarate aminotransferase (EC 2.6.1.19)" (EC 2.6.1.19)

MetaCyc Pathways

• L-arginine biosynthesis I (via L-ornithine) (9/9 steps found)
• L-arginine biosynthesis II (acetyl cycle) (9/10 steps found)
• L-arginine biosynthesis III (via N-acetyl-L-citrulline) (8/9 steps found)
• L-ornithine biosynthesis I (5/5 steps found)
• L-valine degradation I (7/8 steps found)
• superpathway of arginine and polyamine biosynthesis (13/17 steps found)
• 4-aminobutanoate degradation III (2/2 steps found)
• GABA shunt II (3/4 steps found)
• 4-aminobutanoate degradation I (1/2 steps found)
• 4-aminobutanoate degradation II (1/2 steps found)
• GABA shunt I (2/4 steps found)
• superpathway of 4-aminobutanoate degradation (1/3 steps found)
• superpathway of L-arginine and L-ornithine degradation (8/13 steps found)
• L-lysine degradation IV (2/5 steps found)
• superpathway of L-arginine, putrescine, and 4-aminobutanoate degradation (6/11 steps found)
• L-lysine degradation III (2/6 steps found)
• L-lysine degradation X (2/6 steps found)
• 4-aminobutanoate degradation V (2/7 steps found)
• L-lysine degradation I (2/7 steps found)
• nicotine degradation I (pyridine pathway) (4/17 steps found)
• superpathway of L-lysine degradation (8/43 steps found)

KEGG Metabolic Maps

• Alanine and aspartate metabolism
• Arginine and proline metabolism
• Biosynthesis of alkaloids derived from ornithine, lysine and nicotinic acid
• Butanoate metabolism
• Glutamate metabolism
• Lysine biosynthesis
• Lysine degradation
• Propanoate metabolism
• Urea cycle and metabolism of amino groups
• Valine, leucine and isoleucine degradation
• beta-Alanine metabolism

Isozymes

Compare fitness of predicted isozymes for: 2.6.1.11

Use Curated BLAST to search for 2.6.1.11 or 2.6.1.19 or 2.6.1.22 or 2.6.1.48

Sequence Analysis Tools

See Q8EHE7 at UniProt or InterPro

Protein Sequence (425 amino acids)

>SO1276 4-aminobutyrate aminotransferase (NCBI ptt file) (Shewanella oneidensis MR-1)
MSTTNDSLMARRQAAVAGGVGQIHPIFTARAENASVWDVEGREFIDFAGGIAVLNTGHLH
PKVKAAVAAQLEDFSHTCFMVLGYESYIQVCEKLNQLVPGDFAKKTALFTSGSEAVENAV
KVARAYTKRAGVIAFTSGYHGRTMAALALTGKVAPYSKGMGLMSANVFRAEFPCALHGVS
DDDAMASIERIFKNDAEPSDIAAIILEPVQGEGGFYAVSPAFMQRLRALCDREGIMLIAD
EVQTGAGRTGTFFAMEQMGVSADITTFAKSIAGGFPLSGITGRAQVMDAIGPGGLGGTYG
GNPLACAAALAVLEVFEEEKLLERANAIGDRIKSALNTMQVEHPQIADVRGLGAMNAIEL
MEDGKPAPQYCAQILAEARNRGLILLSCGTYGNVLRILVPLTVSDTQLDAGLGILKTSFN
AVLKG