Protein Info for SO1256 in Shewanella oneidensis MR-1

Annotation: hypothetical 4-hydroxybenzoyl-CoA thioesterase (NCBI ptt file)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 137 PF13279: 4HBT_2" amino acids 17 to 132 (116 residues), 42.5 bits, see alignment E=8.7e-15

Best Hits

KEGG orthology group: None (inferred from 100% identity to son:SO_1256)

Predicted SEED Role

"4-hydroxybenzoyl-CoA thioesterase family active site" in subsystem Ton and Tol transport systems

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q8EHG5 at UniProt or InterPro

Protein Sequence (137 amino acids)

>SO1256 hypothetical 4-hydroxybenzoyl-CoA thioesterase (NCBI ptt file) (Shewanella oneidensis MR-1)
MPQFSPSYSFPVQIYYEDTDFSGVVYHPNFLKYFERAREHVIGAEQLRNLWQQQQLGFAV
YRSDMLCHEGVEFADIIDIRTKFYFESKYRTVWHQEIWRPNGKKPAVTATIEMVCMNQAR
QLAPMPAELITQLSLGM