Protein Info for SO1179 in Shewanella oneidensis MR-1

Annotation: conserved hypothetical protein TIGR00043 (NCBI ptt file)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 153 PF02130: YbeY" amino acids 22 to 143 (122 residues), 129 bits, see alignment E=5.4e-42 TIGR00043: rRNA maturation RNase YbeY" amino acids 40 to 145 (106 residues), 123.3 bits, see alignment E=2.4e-40

Best Hits

Swiss-Prot: 100% identical to YBEY_SHEON: Endoribonuclease YbeY (ybeY) from Shewanella oneidensis (strain MR-1)

KEGG orthology group: K07042, probable rRNA maturation factor (inferred from 100% identity to son:SO_1179)

Predicted SEED Role

"Metal-dependent hydrolase YbeY, involved in rRNA and/or ribosome maturation and assembly"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q8EHN9 at UniProt or InterPro

Protein Sequence (153 amino acids)

>SO1179 conserved hypothetical protein TIGR00043 (NCBI ptt file) (Shewanella oneidensis MR-1)
MSLDLALDVQYATTSDYLPSEEQLALWVKTAIGNSMKQAELTIRIVDARESQMLNGTYRG
KDKPTNVLSFPFEAPPEIELPLLGDLVICASVVENEAREQDKTLEAHWAHMVVHGCLHLL
GYDHIEDEEAEEMESLETQLIESLGFTDPYKEQ