Protein Info for SO1167 in Shewanella oneidensis MR-1

Name: rodA
Annotation: rod shape-determining protein RodA (NCBI ptt file)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 372 transmembrane" amino acids 21 to 42 (22 residues), see Phobius details amino acids 54 to 72 (19 residues), see Phobius details amino acids 78 to 97 (20 residues), see Phobius details amino acids 119 to 133 (15 residues), see Phobius details amino acids 142 to 159 (18 residues), see Phobius details amino acids 164 to 181 (18 residues), see Phobius details amino acids 186 to 206 (21 residues), see Phobius details amino acids 268 to 293 (26 residues), see Phobius details amino acids 309 to 336 (28 residues), see Phobius details amino acids 342 to 363 (22 residues), see Phobius details TIGR02210: rod shape-determining protein RodA" amino acids 21 to 368 (348 residues), 457.7 bits, see alignment E=1.4e-141 PF01098: FTSW_RODA_SPOVE" amino acids 26 to 368 (343 residues), 391.9 bits, see alignment E=1.3e-121

Best Hits

Swiss-Prot: 60% identical to RODA_ECOLI: Peptidoglycan glycosyltransferase MrdB (mrdB) from Escherichia coli (strain K12)

KEGG orthology group: K05837, rod shape determining protein RodA (inferred from 100% identity to son:SO_1167)

MetaCyc: 60% identical to peptidoglycan glycosyltransferase MrdB (Escherichia coli K-12 substr. MG1655)
Peptidoglycan glycosyltransferase. [EC: 2.4.1.129]

Predicted SEED Role

"Rod shape-determining protein RodA" in subsystem Bacterial Cytoskeleton or Peptidoglycan Biosynthesis

MetaCyc Pathways

KEGG Metabolic Maps

Isozymes

Compare fitness of predicted isozymes for: 2.4.1.129

Use Curated BLAST to search for 2.4.1.129

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q8EHQ0 at UniProt or InterPro

Protein Sequence (372 amino acids)

>SO1167 rod shape-determining protein RodA (NCBI ptt file) (Shewanella oneidensis MR-1)
METNAMSAHQRQNIWQRLHIDLPLLLGLLAVMGFGLFVIYSASGEDLGMMERQLFRMFLS
ICVMFTMAQINPEALKRWALPIYLAGVVLLLAVHFFGEINKGAQRWLNLGFMEFQPSELI
KLAFPITMAWYISKFPLPPKKRYLAGAGVILLIPTLLIAKQPDLGTSILVAASGIFVLFL
SGMSWAIVGGFIAAVLAFLPILWYFLMHDYQRTRVLTLLDPEQDPLGAGYHIIQSKIAIG
SGGLWGKGWLDGTQSQLEFIPERHTDFIFAVIGEEFGLIGSIILLLMYLYIIGRGLVIAS
NAQTSFARLLAGSITLTFFVYVFVNIGMVSGILPVVGVPLPLVSYGGTSMLTLMTGFGIL
MSIHTHRRFVDR