Protein Info for SO1163 in Shewanella oneidensis MR-1

Annotation: conserved hypothetical protein (NCBI ptt file)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 25 50 75 88 PF04359: DUF493" amino acids 7 to 88 (82 residues), 99.7 bits, see alignment E=5.7e-33

Best Hits

Swiss-Prot: 100% identical to Y1163_SHEON: UPF0250 protein SO_1163 (SO_1163) from Shewanella oneidensis (strain MR-1)

KEGG orthology group: K09158, hypothetical protein (inferred from 100% identity to son:SO_1163)

Predicted SEED Role

"Proposed lipoate regulatory protein YbeD" in subsystem Lipoic acid metabolism

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q8EHQ4 at UniProt or InterPro

Protein Sequence (88 amino acids)

>SO1163 conserved hypothetical protein (NCBI ptt file) (Shewanella oneidensis MR-1)
MLNTKFDELMEFPCAFPFKVVGDAHETLTDRVVAVVQKHAPGDYSPTVKASSKGSYYSVT
IRVTVTSKDHIETLYTELANIEGVRRVL