Protein Info for SO1136 in Shewanella oneidensis MR-1

Annotation: ATP-dependent RNA helicase, DEAD box family (NCBI ptt file)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 447 PF00270: DEAD" amino acids 40 to 219 (180 residues), 145.7 bits, see alignment E=1.7e-46 PF04851: ResIII" amino acids 41 to 215 (175 residues), 22.7 bits, see alignment E=1.3e-08 PF00271: Helicase_C" amino acids 257 to 365 (109 residues), 89.1 bits, see alignment E=3.5e-29

Best Hits

KEGG orthology group: None (inferred from 100% identity to son:SO_1136)

Predicted SEED Role

"ATP-dependent RNA helicase VCA0990" in subsystem ATP-dependent RNA helicases, bacterial

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q8EHT1 at UniProt or InterPro

Protein Sequence (447 amino acids)

>SO1136 ATP-dependent RNA helicase, DEAD box family (NCBI ptt file) (Shewanella oneidensis MR-1)
MTIPKLSPSPESYPESLTFAELGLNAALRKALPTRLKHPTRVQQLAIPAILAGRDLLALS
QTGSGKTFAFGLPLLQILWQQIAVQTTAKSVPAAKPLALVLVPTRELALQVSEALHALAS
QLSTSAPLNIQLLCGGVALEQQLADLSAKPQLVVATPGRLLDLCTQSHISLDAIKHLVLD
EADRLLEMGFWPDMQKLMAMMPKRKQTLLFSATLPEALDSLAGKLLTNDPLKVEASTRNA
VVGEIEEQLYLVNKGSKAQALIALLKQYQWPQVLVFISARDDADAIAKRLVKAGINAAAL
HGEKDQTVRSQTLADFKADRIQVLVATDLMARGIHVDALPVVINLDLPTSAPVYVHRIGR
TARAGAKGLAISLVCHGEMPNLTAIRNLTARALPLVFLADFPVTDKPSEKIIDGAENKVI
PKRPPRDKQANRRSINKHSVKAFKGKR