Protein Info for SO1096 in Shewanella oneidensis MR-1

Annotation: hypothetical protein (NCBI ptt file)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1045 transmembrane" amino acids 182 to 203 (22 residues), see Phobius details amino acids 215 to 234 (20 residues), see Phobius details amino acids 244 to 263 (20 residues), see Phobius details amino acids 269 to 289 (21 residues), see Phobius details amino acids 297 to 314 (18 residues), see Phobius details amino acids 320 to 337 (18 residues), see Phobius details amino acids 345 to 364 (20 residues), see Phobius details amino acids 376 to 397 (22 residues), see Phobius details amino acids 404 to 422 (19 residues), see Phobius details amino acids 428 to 445 (18 residues), see Phobius details amino acids 457 to 473 (17 residues), see Phobius details amino acids 479 to 496 (18 residues), see Phobius details amino acids 508 to 528 (21 residues), see Phobius details amino acids 536 to 557 (22 residues), see Phobius details amino acids 577 to 596 (20 residues), see Phobius details amino acids 602 to 618 (17 residues), see Phobius details amino acids 629 to 650 (22 residues), see Phobius details amino acids 659 to 678 (20 residues), see Phobius details amino acids 690 to 711 (22 residues), see Phobius details amino acids 717 to 736 (20 residues), see Phobius details amino acids 743 to 762 (20 residues), see Phobius details amino acids 768 to 785 (18 residues), see Phobius details amino acids 797 to 817 (21 residues), see Phobius details amino acids 823 to 841 (19 residues), see Phobius details amino acids 871 to 889 (19 residues), see Phobius details amino acids 899 to 918 (20 residues), see Phobius details amino acids 937 to 954 (18 residues), see Phobius details amino acids 960 to 980 (21 residues), see Phobius details amino acids 988 to 1010 (23 residues), see Phobius details amino acids 1016 to 1033 (18 residues), see Phobius details PF10101: DUF2339" amino acids 187 to 834 (648 residues), 80.8 bits, see alignment E=4.8e-27

Best Hits

KEGG orthology group: None (inferred from 100% identity to son:SO_1096)

Predicted SEED Role

"FIG01056863: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q8EHW6 at UniProt or InterPro

Protein Sequence (1045 amino acids)

>SO1096 hypothetical protein (NCBI ptt file) (Shewanella oneidensis MR-1)
MPLKDDVDQLKAELAQLKLQHLSQQTSLSRQLAEFSAKLDTLSIRLEQQDNGANPTNITM
EIAAPEPSPIAISVDNHTMGSDVAKQSEAVSHSIQPQATSPWQDDPWQRPREQHPNADSQ
QATDHELTKQVRAELGAQATNQVEAQVEAFLSQGVAAIMAPFVAIKEQVKGFYQHYQAKG
LGPVFLMTVAGIITLTLGFGYLLQYSINHWFSELGKALLGFGCANAIIAGGIFIRQKRQG
MADFGSGIVGLGLILNYLCAYFIGPYFEIIPNSASFILLLLITLAGYGLSMRLDAKVIAV
IALIGGSTAPMMLLSQSYAPLLYIPYLLLIGTGALAQSRKLQWPLLLEITAFLHIACIET
FSYFVDLPIHHWDSAAVLAVVSINALFYLYGIVGLIFSSSTTLSHRALALPIALLAFVLF
ELTQFTEFAGEIFIVNALACAGLYLKLKNRLDKSQSSLLLVFGGSFAAFAALYLLSHDFL
GLVLLLEAILLLWIGLKEKLISVRAEAYVLLVMALALNAYGLLSGLTLLEQATLSPVGAL
GFPLIALALSAGGLFFTINQLTNNELKLSKLEGQLSYLLKEILSGFYVATLLVAAYLISS
DYYLAIVPLLSLLLLYLSSKDKLIASEFAAWLLLLPLLFAVIEGITLSGSMSFRAQPLMA
KLARIELFTALLLTHYWYRRYYPTSLFAQAAKQIQIGCYLLLPLLLLPKIIRSYWEFTAA
ALWFSGLFSLGLAYVIKHKALKIEAKILTWLAVLTTASLCLFEIWQGLIALLIGTLVMGF
VLIRYRKLPEEWRQLLTLQWQLSPYYFALVLAVLVYGLNHIDVVAWSMTALALSGYFALL
IQRRAKHTGPKKGLLVHIANEMQAAIRPSYSLAYGLCLGFALLPILLHFEISLRVDLNNA
LLILCEFTALALLATLILRRGVAIRLHRPFLPLQWLKWGWHGLLALSYLTWSYVFDNMIA
APLSAILLVVHGSVLMFISLKPQHSDMIRLAAGLFTLATLKVLLLDMASFELVQKVIAFM
LIGVILLTVSYFYQKARNRQQQANS