Protein Info for SO0856 in Shewanella oneidensis MR-1

Annotation: conserved hypothetical protein (NCBI ptt file)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 897 transmembrane" amino acids 41 to 61 (21 residues), see Phobius details amino acids 289 to 312 (24 residues), see Phobius details amino acids 332 to 356 (25 residues), see Phobius details amino acids 387 to 408 (22 residues), see Phobius details amino acids 436 to 454 (19 residues), see Phobius details amino acids 460 to 485 (26 residues), see Phobius details amino acids 505 to 525 (21 residues), see Phobius details amino acids 767 to 789 (23 residues), see Phobius details amino acids 815 to 840 (26 residues), see Phobius details amino acids 860 to 882 (23 residues), see Phobius details PF02687: FtsX" amino acids 291 to 413 (123 residues), 29.8 bits, see alignment E=5.5e-11 amino acids 771 to 881 (111 residues), 50.4 bits, see alignment E=2.3e-17

Best Hits

KEGG orthology group: K02004, (no description) (inferred from 100% identity to son:SO_0856)

Predicted SEED Role

"AttF component of AttEFGH ABC transport system / AttG component of AttEFGH ABC transport system"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q8EII3 at UniProt or InterPro

Protein Sequence (897 amino acids)

>SO0856 conserved hypothetical protein (NCBI ptt file) (Shewanella oneidensis MR-1)
MMNNALLGHKANPYHHLSKNGQWLRITWVLKVFFAHYRHAPLQAGAILLGIALAVTLLIG
VKATNDNAIRSYSEATELLSQRADVLLTSPVGQDNLDESVYFSLRQAGISQSLAVVSGRV
AGQNGQYWQIEGSDIVAALTATLTSKNTSPSSNSKATANSAVSMGDLPLAALMSGEPVVV
MSDSLASKIAPNGQLSLAQSIAPSTLKVIRVDDSWGLGSAILTDISLAQNLLGMQGKLSY
IALFSDRDKLAALKQRLDTLGITPDLANYSQQDQGQALMALTRSFHLNLNAMSMLAFVVG
LFIAYNGVRYSLMKRQRLLIQLLQQGLKRLDVMLALLAELLFLVILGSVIGFILGLQLSH
WLQPMVAMTLEQLYGAHLLPGIWQWHWLAQAIALTLVAALAACLPLYFDLTRQSLAQGAN
RYQQTKAHNQTHQRQFILACGLLVLAAILFPFSQSYNTSLILLGIVTVAIPLLLPQVLHW
GVSLLLPFTRPGLKHYLLAETRELIAPLSLAMMAILLALSANVAMNTLVGSFEQTLRSWL
ETRLHADLYLRPSANRMADVRDKLSQDPRVSGLYQQWQVDAEISIQGPTPQTIPVNLISR
DDESIKYTSTLKDSLPDLWQRYFGGQFVLVSEPMAIKYQLMLGDKVTLNVLDKTTNNQVV
IAGIYYDHGNTRNELIISHQLWQQAQLPLLPISLAASFYPLGQANKSSSSVLTQPIPTNG
KRSEAELDELQMQLATELELAQAQIYSQANIKAQAIAMFKRTFSITLVLNSLTLLVAAIG
LFSACLMLTQARQAPLARLYSLGVSRSKLRTMVFSQMLLVVVITCLIAMPTGALLGYLLI
DKITLQAFGWTIPMIWDWFAYTKAILIALVTCTLAVLLPLYWQTRRPLIASLQQETL