Protein Info for SO0855 in Shewanella oneidensis MR-1

Annotation: conserved hypothetical protein (NCBI ptt file)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 425 transmembrane" amino acids 28 to 46 (19 residues), see Phobius details PF07143: CrtC" amino acids 103 to 290 (188 residues), 185 bits, see alignment E=1.8e-58 PF17186: Lipocalin_9" amino acids 293 to 425 (133 residues), 136 bits, see alignment E=9e-44

Best Hits

KEGG orthology group: None (inferred from 100% identity to son:SO_0855)

Predicted SEED Role

"AttH component of AttEFGH ABC transport system"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q8EII4 at UniProt or InterPro

Protein Sequence (425 amino acids)

>SO0855 conserved hypothetical protein (NCBI ptt file) (Shewanella oneidensis MR-1)
MNSRPYTITQLKVNGLFAMSLLKCRTNARLISQLIIGGLLLFMISGCDNAPASVSESKSM
GALLGQTKEGETTSTQQAFAKVTPEHQFHFPQDHLAHNGFRQEWWYLTANLTTEKGEQLG
AQWTQFRVALKPQYTESQNAQPTTLKSAWATEQLYFAHSALTSSAAHLAHEKWSRGHPKL
AGVNANPYQIHLDNWQLQSESNALFPAILRVETADFSYELTLTSQAPLQYQGDNGYSIKN
REGNVASYYYSQPFITITGQITRHININGQAENRVEKVTGQGWLDREWSSQFLTKSQQGW
DWFALRLNDGSALMLFQLREQSTDKTQTPSAFYSARRMFADGTGRNINSRDTPDGIKMTP
LGWQTTRTGKYPVSWQVQIPSEQIDIRISPLNPNSAMALSTSYWEGPIKLSGSHTGMGYM
ELTGY