Protein Info for SO0850 in Shewanella oneidensis MR-1

Annotation: hypothetical protein (NCBI ptt file)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 542 signal peptide" amino acids 1 to 14 (14 residues), see Phobius details amino acids 34 to 35 (2 residues), see Phobius details transmembrane" amino acids 15 to 33 (19 residues), see Phobius details PF04519: Bactofilin" amino acids 197 to 284 (88 residues), 35.1 bits, see alignment E=2e-12 PF20597: pAdhesive_15" amino acids 234 to 515 (282 residues), 36.3 bits, see alignment E=8.9e-13 PF23981: DUF7305" amino acids 383 to 520 (138 residues), 70.7 bits, see alignment E=2.3e-23

Best Hits

KEGG orthology group: None (inferred from 100% identity to son:SO_0850)

Predicted SEED Role

"Type IV fimbrial biogenesis protein PilX" in subsystem Type IV pilus

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q8EII9 at UniProt or InterPro

Protein Sequence (542 amino acids)

>SO0850 hypothetical protein (NCBI ptt file) (Shewanella oneidensis MR-1)
MDKLRPAIGNKEHGAVLLIVLVFSLLASLLVVTSLRDNLVQERLSGNFQKQINAQLLAEQ
GMHESYNQLKNQLKQTPNQSLQTLYDQLPTNANGSLEGSSYALDNGKITGAELSLDSRGQ
HLEGQAKLNAQFTLQASKGNTIFNDAIVSCESLNLTGSSSIDGYDSRKGAYGDSISNGQG
GSQRNQHGKGNVTTIEPNANITLTGNAPIYGDVSATGSVTLSGSSSLSGSIQANNDVTLG
TGTVSGNIAAGNNFKLANSGKVEGSVKANNNASTAPSAQINGTLQYGGEGNFHQNSQIGN
LVNTRPNLPPVPTKSCDPLDISAVMGGFKMPNNGARRIDSNANVTITPTGSSKTELSWKG
DYFPSLTPTAETIFGTETPVFNLDSLVMSADGVLNISGGDVTLIVNGDFKMSGSNQLNVA
PGSSLTLLFVNGEISFTAGANNGNNIKAQTLTDTHKPPVSIFSGSDKDVTVSGNVPIYAA
LYAPKSKVNLQGGPEIFGSVRGKAITATGNGKIHYDNALGSADLGEDHALPAVVLLKQWQ
YL