Protein Info for SO0809 in Shewanella oneidensis MR-1

Name: azu
Annotation: azurin precursor (NCBI ptt file)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 158 signal peptide" amino acids 1 to 30 (30 residues), see Phobius details PF00127: Copper-bind" amino acids 31 to 156 (126 residues), 78.5 bits, see alignment E=2.2e-26 TIGR02695: azurin" amino acids 32 to 156 (125 residues), 206.1 bits, see alignment E=9e-66

Best Hits

Swiss-Prot: 55% identical to AZUR_BORPA: Azurin (BPP3406) from Bordetella parapertussis (strain 12822 / ATCC BAA-587 / NCTC 13253)

KEGG orthology group: None (inferred from 100% identity to son:SO_0809)

Predicted SEED Role

"Azurin"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q8CVD5 at UniProt or InterPro

Protein Sequence (158 amino acids)

>SO0809 azurin precursor (NCBI ptt file) (Shewanella oneidensis MR-1)
MKATSTIFRNMTSATLLGLGLFVASQASANECELKIAATDAMQFDTKELSVPATCKEVTL
TLTHTGTLPKAAMGHNWVLTKAADMSAVATDGMGAGADAAYVKAGDSRVIAHTGLVGGGE
STSVTFSTAGMSPTEAYQFFCSFPGHRAIMQGSFKLKG