Protein Info for SO0807 in Shewanella oneidensis MR-1

Name: hpt-1
Annotation: hypoxanthine-guanine phosphoribosyltransferase (NCBI ptt file)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 188 PF00156: Pribosyltran" amino acids 19 to 163 (145 residues), 40.1 bits, see alignment E=1.2e-14

Best Hits

KEGG orthology group: K07101, (no description) (inferred from 98% identity to shm:Shewmr7_0642)

Predicted SEED Role

"Hypoxanthine-guanine phosphoribosyltransferase (EC 2.4.2.8)" in subsystem Purine conversions (EC 2.4.2.8)

MetaCyc Pathways

KEGG Metabolic Maps

Isozymes

Compare fitness of predicted isozymes for: 2.4.2.8

Use Curated BLAST to search for 2.4.2.8

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q8EIN0 at UniProt or InterPro

Protein Sequence (188 amino acids)

>SO0807 hypoxanthine-guanine phosphoribosyltransferase (NCBI ptt file) (Shewanella oneidensis MR-1)
MSEKYFVTAQQLLEDSFLLASQVYESGFRPQFIVGIWRGGAPIGIAVQEFFDFKQVETDH
IAVRTSSYYGIGTDKQSKEIKVHGLHYIVENANASDSLLIVDDVFDSGRSIHALKEKLGQ
LMRLNMPKDIRIACPYYKPKNTAVPLKPDYYIHASEDWLVFPHEVTGLTPEEIAEGKGDL
KNIQHLFK