Protein Info for SO0801 in Shewanella oneidensis MR-1

Annotation: conserved hypothetical protein (NCBI ptt file)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 304 PF00135: COesterase" amino acids 63 to 171 (109 residues), 48.9 bits, see alignment E=1e-16 PF10340: Say1_Mug180" amino acids 66 to 196 (131 residues), 40.9 bits, see alignment E=2.5e-14 PF20434: BD-FAE" amino acids 68 to 169 (102 residues), 68 bits, see alignment E=1.8e-22 PF07859: Abhydrolase_3" amino acids 77 to 282 (206 residues), 236.6 bits, see alignment E=5.3e-74

Best Hits

KEGG orthology group: None (inferred from 100% identity to son:SO_0801)

Predicted SEED Role

"FIG00543870: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q8EIN6 at UniProt or InterPro

Protein Sequence (304 amino acids)

>SO0801 conserved hypothetical protein (NCBI ptt file) (Shewanella oneidensis MR-1)
MSERYLENGIRQLVSEFIAAGCPSVREQSLEERRQGYIASTVLAGEPEAVFEVKSVSLEG
IELTLFKPSADNNLPVVIYYHGGCFVSGGIATHNQQLRKIANDSGALVVAVSYRLAPEHV
YPAAHDDAFNAANLVQQHCHQWGGDNTNITLMGDSAGGHLALVTCLRLKAKGEWLPKKQV
LIYPMLDATAKSQSYIDNGDKYIITRDTLLTGFDMYLDWHPRTDVEASPLRSHDLAGLPE
THIITAEFDPLLDEGEQLFRHLLAAGVDAHCRRYLGVIHGFFQLAGVSQSARDAMAQVTH
IIRA