Protein Info for SO0680 in Shewanella oneidensis MR-1

Annotation: hypothetical protein (NCBI ptt file)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1308 PF20155: TMP_3" amino acids 285 to 465 (181 residues), 110.4 bits, see alignment E=4.7e-36 TIGR02675: tape measure domain" amino acids 353 to 427 (75 residues), 72.7 bits, see alignment 1.2e-24

Best Hits

KEGG orthology group: None (inferred from 100% identity to son:SO_0680)

Predicted SEED Role

"FIG01057301: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q8EIZ5 at UniProt or InterPro

Protein Sequence (1308 amino acids)

>SO0680 hypothetical protein (NCBI ptt file) (Shewanella oneidensis MR-1)
MADKTLELALRIVAEATGKQHIAALVDELKRIGAESDAANPKTQALADEIDSVSDASQAG
ANQVDELKNSLDPLSNQLDQVAQSGRNTSNQAEQLTNELKPLATGLNDVGDSSQSTSQKA
NTLANKLDELANQQDLINTFKRSRNELEQQELAVTAAALALQDLKQRASQTDAPFVQLAR
SIDVAEKELEQMQRELAQQSASHTKLQNALSKSGIDYNNLTTAQRKLSSEFDGTGRNVDK
FANQLDKGNASARDHAASLRGVITQVTALAGAYVGFDRVAQAVKDIFATGDQFERLGVQM
NAVMGGFESGRQATAWVKQFAIDVPLQLNEVNQAFVKAKAFGLDPMNGTMKAIVDQAFKL
GGGFQEVEGITLALGQAWAKQKLQGEEILQLIERGVPVWDMLAKVTGKNSLELEKLSSQG
KLGRDVIQALIDEMGRASNGSAAAQMALLSGQVSNLKDNLTNFYDLVAQSGALDWLKGQI
SELNLEFAAMASDGRLREWAQQISDTIVSIGSAVQDGAAMLYHFRDEIGFVAKAFLALKV
GSYFSHVITGANAAIGAMRLYTGAIAGTTAASETATLAAGKLKAALAAAAKAGLYLALIN
ELIEVARVYQELLIAEEALAKSKRTTAASAKQLAFSLKDLSEQTGVAFTTMAEFNQAVDD
GKLIYDEASGKWKNAAKAMEQVKQAAVEVVEPIKLTVDEALRLTLTLSDQVKTLDDVKGG
MGGFIRQIDAALEPLKAAGTEYAGHVKLLTELRAKFEEQQSYLDATAKGTAALEQAYKDL
GITSSQALTDATNKAETAFNLIRDNREPLEQQKDAFLAWAKAALTAAEATGAVVPESLKA
QAATLGLSKELNDLTAKQYGYTDSTKELSPEQAKLSRAVAETEARLKQCRDVMNSSTVSS
KEKSKAQQELINLQGKLSAQTQQLSEVQALEAANYEQIKSKYAAVSDEMLRLEKAYKDGG
ITAEEYLQQKERLVQVLNVLQRLMGGLQDGEQETDEQVKKTTKTLIEQRQELEQLEETTG
RATEYVNLFAGAYAHLNKQFSFNQDSTEKLNARLDELTKSIMNNMRVNTGFWGVLAQLSN
QAFIREKQIINETLLTRKWAEELESSTITLSRVNQISRESGYLIRELGDEELKPLQAAID
ATRNRILGLRDDINATLGSLKDEMDQLNNNQAAIEKRRYEQQQAELKAQLDAARTAQDNE
SIASAQEALQLSQQIYATKLKQIEAEAAERNARAKDSVSSSTNTATNSTRSNASQAPAPS
VNNPNTGGSVQVYRLELVMPSGNVLKADLLDEFKQMFLRELEQIKATS