Protein Info for SO0542 in Shewanella oneidensis MR-1

Annotation: conserved hypothetical protein (NCBI ptt file)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 451 transmembrane" amino acids 402 to 419 (18 residues), see Phobius details TIGR02421: conserved hypothetical protein" amino acids 19 to 408 (390 residues), 484.3 bits, see alignment E=1.4e-149 PF08014: MATCAP" amino acids 40 to 410 (371 residues), 458.8 bits, see alignment E=6.6e-142

Best Hits

KEGG orthology group: None (inferred from 100% identity to son:SO_0542)

Predicted SEED Role

"FIG01058035: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q8EJC5 at UniProt or InterPro

Protein Sequence (451 amino acids)

>SO0542 conserved hypothetical protein (NCBI ptt file) (Shewanella oneidensis MR-1)
MSESLAQYQEDLRRFSDELIRIQTPIKILDAIKWPREMEERFLSSKGTVLPAIKQDFYQN
IALPFDPAKTQAELLSLKNDIHRRLGKKDKLGKLLVANVDQYRLVVDMLGHRGTPTFGKL
SQELYGSASHRLHGDRHTLRQLGDRLSYIFSLPAARHMNKHHPKIISAPEAVNVLSQRLE
KYFHSDDMRVRLSDGIVSDAAVGGDTVKLNSKAMFSESDLNVYEVHEGWVHVGTTLNGRA
QPHATWLSVGSPRVAATQEGLAVLLEMLTLSSNPGRARRISDRVAAVDMAENGADFIEVF
NYFRELNLSAKDSYRVTQRVFRGGMVEGGSFFTKDISYVRGYVENINFIRSAITSGLPEL
IPMLFLGKLAIEDIPVLYQACQEGILTPPKYLPPMFDNFSGLYAWFGFASGLAGIDLKGV
QRHFTRLFKDVPSIDPSLELLDDTEFDNNSD