Protein Info for SO0518 in Shewanella oneidensis MR-1

Annotation: outer membrane efflux family protein, putative (NCBI ptt file)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 452 signal peptide" amino acids 1 to 30 (30 residues), see Phobius details PF02321: OEP" amino acids 66 to 235 (170 residues), 43.2 bits, see alignment E=2e-15

Best Hits

KEGG orthology group: None (inferred from 100% identity to son:SO_0518)

Predicted SEED Role

"outer membrane efflux family protein, putative"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q8EJE9 at UniProt or InterPro

Protein Sequence (452 amino acids)

>SO0518 outer membrane efflux family protein, putative (NCBI ptt file) (Shewanella oneidensis MR-1)
MKKTIIAQTLFGLLSTLVLAAGQVSQVVAANSVLPAQAPMAVGPLLAEGDPFTPDTQASL
NQWLPELLKQINQLPEVQAQIARQQQAELAIAAADRAVYNPELGLNYQNSETDTYTVGLS
QTLDWGDKRGVATRLAQLEAQILLADIRLERSQMLAERLLALAEQAQGQKALTFAEQQLR
FTQAQLNIAEQRFAAGDLSDVELQLLKLELASNTADYALAEQAALVAEGKVIELLGVDKL
KFREFISEIGQFVSMISPKAELPALTSAHQQVLLAKANALKVKADTAADPTINLGLEREG
TDNKLGIGVAIPLQVRNNYSELQSAADKGIAIAEQNYLARERVLTAKQAQFNNALPRLLA
RYQDWRERVEASGSKAAKSLSEQWRSGDVSTSEYLQSRRQLAASYLVGLNLETAIYQSWL
TWMGDSGQLQPFIDSFPSTSTTNAVPAKSIVR