Protein Info for SO0433 in Shewanella oneidensis MR-1

Name: rsd
Annotation: regulator of sigma D (NCBI ptt file)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 161 PF04353: Rsd_AlgQ" amino acids 1 to 151 (151 residues), 204 bits, see alignment E=6.1e-65

Best Hits

Swiss-Prot: 38% identical to RSD_YERPB: Regulator of sigma D (rsd) from Yersinia pseudotuberculosis serotype IB (strain PB1/+)

KEGG orthology group: K07740, regulator of sigma D (inferred from 100% identity to son:SO_0433)

Predicted SEED Role

"Regulator of sigma D"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q8EJN0 at UniProt or InterPro

Protein Sequence (161 amino acids)

>SO0433 regulator of sigma D (NCBI ptt file) (Shewanella oneidensis MR-1)
MLRELEKAEQKWGGSNKLIDQWLENRRKLLVHYCQIAGLPPYTNAEKSLPSFEHVKSFCD
LLVDYVSEGHFEVYDQVINACEKFGAPCKAAIQQVLPKITPTTNAALDFNDKYAETQDDQ
VLYQLDKDLSELAHTMETRFELEDKLLEVLHSKYSEHAQQA