Protein Info for SO0427 in Shewanella oneidensis MR-1

Annotation: sensory box protein (NCBI ptt file)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1400 1491 signal peptide" amino acids 1 to 26 (26 residues), see Phobius details transmembrane" amino acids 767 to 790 (24 residues), see Phobius details TIGR00229: PAS domain S-box protein" amino acids 857 to 932 (76 residues), 23 bits, see alignment 7.3e-09 amino acids 934 to 1053 (120 residues), 49.7 bits, see alignment E=4e-17 PF08447: PAS_3" amino acids 858 to 913 (56 residues), 37 bits, see alignment (E = 1.4e-12) PF13188: PAS_8" amino acids 935 to 979 (45 residues), 21.9 bits, see alignment (E = 5e-08) PF00989: PAS" amino acids 936 to 1043 (108 residues), 30.6 bits, see alignment 1.2e-10 PF08448: PAS_4" amino acids 940 to 1048 (109 residues), 37.1 bits, see alignment 1.3e-12 PF13426: PAS_9" amino acids 945 to 1045 (101 residues), 29.6 bits, see alignment 2.9e-10 TIGR00254: diguanylate cyclase (GGDEF) domain" amino acids 1054 to 1216 (163 residues), 131.8 bits, see alignment E=2e-42 PF00990: GGDEF" amino acids 1057 to 1213 (157 residues), 168 bits, see alignment E=5.9e-53 PF00563: EAL" amino acids 1234 to 1470 (237 residues), 258.8 bits, see alignment E=1.7e-80

Best Hits

KEGG orthology group: None (inferred from 100% identity to son:SO_0427)

Predicted SEED Role

"diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s)" in subsystem Bacterial hemoglobins

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q8EJN6 at UniProt or InterPro

Protein Sequence (1491 amino acids)

>SO0427 sensory box protein (NCBI ptt file) (Shewanella oneidensis MR-1)
MKKIIIHFLLASMLVFCSGLYSAWAGNFVQRVFTDRDGLEATSIRALTLDDHGFIWAATE
QGLYRVSNSKVRRIDKTGSELRLADEFITTVVNIDRDLLLLSTNAATYLYNIAKNQFIQM
GSPNLFPHFSGGVLISAVRKNAQEWRLLIDNGQIYDLSTATLTLTLVTQLPVNRDLPWRK
LLSMPDGQILVAGQFQLLLLNHLGEKLVDYQWTESMGNILDMLEDSKQRIWIATSRGVYR
FEPQTLQISPVPELPDWSTAMVEDRHGEIWFSSRAGLLKWSPDTHQLENYQQELKAQANM
ETLKAILFDKSGLMWVGGSGDGLALLASQPDFILDTFTSEPPHELSDAMVWSVFASDEGL
WFGASHLSFIARNSQKAVTIDIDGLKPHESIYGISDFIDHYLLVSTTSGLFVVDKLTLKG
SSFAQWAHGSEAFKNKVIYGTYADPKLKGRFWIASATGLYFWEQGLFEPQPFNIDGPTGD
DSPELKRPTIRTLYRASDGKLWISGRKVFGYIDEQNLFHDQRQLFSGLNSEPSISHLEEI
SPGVMWFGSYERGLFEYHLQDGKLVSLTLQWQVNCSSVFFIQKTTNANIVACADSLIRQD
RASGQIAMFTQLDGLISNEMNEGAYFYSPGAGLYIGTPEGVMHLDADKLTNRIADDHVML
ESVSVYYDNNTQVSLLPQPMMVIKPGANMVSLQITNLDYLDDSPIQFKYRLRYQGDEDNY
VLLQGESQINLAGLAAGEYVLEVLSQVNGIWSDKPFTFPFYVEQHWWLSQGFKGILLLVF
SIIALGLAWYRQRQVRTFMAMNQALTESDDRLRQSLRGSDSDLWEWHRDTQCFYLDNRGY
VLGNHANEIVLTLETLPVHPLDREKVLIQWNRMLSGDLDRFEAEYRYHRRDGNWGWLRVR
GRPVARNKQTQEIERVAGIYSDITLRRQLEDEVSLLAQAFENTSEGVLILDVDENIRVAN
HAAQHIIGSEQKSLVGLSFSQFVQMKDGLSTEVAQLLGQETSWTGERELVGQNGLVCPVW
LNVSVMQSVNQNAIHYVVVFSDITERKRTEADLRRLANYDVLTGLPNRSLFSNRLMQSIQ
AAEQNGEKLALLFLDLDRFKHVNDSYGHSMGDALLVEASNRLQSCIGSEHLLCRFGGDEF
VILLKNVKELSDINHLAEQLLAQIVAPFRLFGREFYISTSIGISIWPDDAMQPEAFIKNA
DLAMYHAKEEGRGNFKYYSSERNAQALYHLRLEADLRKAIERQEFELYYQPQIDILRGDK
FIGMEALIRWQHPVDGFVRPDIFIKVAEACGLVVDIDRWVLRCACLDGARWAKQTIEPFK
MSVNISAVHFRQPDFIDGVKKILDATHMPASSLCLEITEGVLMKELQVAKTHLKQLDDLG
IEVAIDDFGTGYSSLAYLRNFEVDTLKIDRSFLIDIASNGADQAIVSSIIELARNLKLTV
IAEGVETVEQLEQLFSRGCYIVQGYYFAKPMSVSDFEKYLQSQYPLDSLQS