Protein Info for SO0231 in Shewanella oneidensis MR-1

Name: rplC
Annotation: ribosomal protein L3 (NCBI ptt file)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 212 TIGR03625: 50S ribosomal protein uL3" amino acids 4 to 207 (204 residues), 296.2 bits, see alignment E=6.6e-93 PF00297: Ribosomal_L3" amino acids 103 to 185 (83 residues), 46.9 bits, see alignment E=1.1e-16

Best Hits

Swiss-Prot: 100% identical to RL3_SHESA: 50S ribosomal protein L3 (rplC) from Shewanella sp. (strain ANA-3)

KEGG orthology group: K02906, large subunit ribosomal protein L3 (inferred from 100% identity to shm:Shewmr7_0194)

MetaCyc: 81% identical to 50S ribosomal subunit protein L3 (Escherichia coli K-12 substr. MG1655)

Predicted SEED Role

"LSU ribosomal protein L3p (L3e)" in subsystem Ribosome LSU bacterial

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q8EK68 at UniProt or InterPro

Protein Sequence (212 amino acids)

>SO0231 ribosomal protein L3 (NCBI ptt file) (Shewanella oneidensis MR-1)
MAIGLIGRKVGMTRIFTEDGVSIPVTVIEVAGNRVTQVKTLETDGYRALQVTTGTKKANR
ITKPEAGHFAKSGVEAGRGLWELRLADGEGEGIEVGAELNVGIFADVAKVDVTGQSKGKG
FQGGVKRWNFRTQDMTHGNSLSHRSNGSIGQNQTPGRVFKGKKMSGHMGAERVTTQNLDV
VRVDVERNLLLVKGAVPGATNGDLIIKPAVKA