Protein Info for SO0177 in Shewanella oneidensis MR-1
Annotation: HAD-superfamily hydrolase, subfamily IA, variant 3 protein family (NCBI ptt file)
These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.
Protein Families and Features
Best Hits
Swiss-Prot: 49% identical to YRFG_SHIFL: GMP/IMP nucleotidase YrfG (yrfG) from Shigella flexneri
KEGG orthology group: K07025, putative hydrolase of the HAD superfamily (inferred from 100% identity to son:SO_0177)MetaCyc: 49% identical to purine nucleotidase (Escherichia coli K-12 substr. MG1655)
5'-nucleotidase. [EC: 3.1.3.5, 3.1.3.99]; 3.1.3.5 [EC: 3.1.3.5, 3.1.3.99]
Predicted SEED Role
"FIG001957: putative hydrolase"
MetaCyc Pathways
- inosine 5'-phosphate degradation (3/4 steps found)
- purine nucleotides degradation II (aerobic) (8/11 steps found)
- UTP and CTP dephosphorylation I (5/7 steps found)
- NAD salvage pathway III (to nicotinamide riboside) (2/3 steps found)
- adenosine nucleotides degradation II (3/5 steps found)
- adenosine nucleotides degradation I (5/8 steps found)
- guanosine nucleotides degradation I (2/4 steps found)
- guanosine nucleotides degradation II (2/4 steps found)
- guanosine nucleotides degradation III (2/4 steps found)
- superpathway of guanosine nucleotides degradation (plants) (3/6 steps found)
- purine nucleotides degradation I (plants) (7/12 steps found)
- ureide biosynthesis (3/7 steps found)
- NAD salvage (plants) (3/11 steps found)
- tunicamycin biosynthesis (1/9 steps found)
- superpathway of purines degradation in plants (7/18 steps found)
KEGG Metabolic Maps
- Biosynthesis of alkaloids derived from histidine and purine
- Nicotinate and nicotinamide metabolism
- Purine metabolism
- Pyrimidine metabolism
Isozymes
Compare fitness of predicted isozymes for: 3.1.3.5
Use Curated BLAST to search for 3.1.3.5 or 3.1.3.99
Sequence Analysis Tools
PaperBLAST (search for papers about homologs of this protein)
Search CDD (the Conserved Domains Database, which includes COG and superfam)
Compare to protein structures
Predict protein localization: PSORTb (Gram-negative bacteria)
Predict transmembrane helices and signal peptides: Phobius
Check the current SEED with FIGfam search
Find homologs in fast.genomics or the ENIGMA genome browser
See Q8EKB8 at UniProt or InterPro
Protein Sequence (220 amino acids)
>SO0177 HAD-superfamily hydrolase, subfamily IA, variant 3 protein family (NCBI ptt file) (Shewanella oneidensis MR-1) MFDWKTIDTVLLDMDGTLLDLHFDNHFWLSLVPQELSRQRGLSQDQAHKLVVESYSKVAG TLNWYCIDYWQTELQLDIMGLHRTLVDRIQLRQDSMPFLDALKAAGKKRILVTNAHPKSL ALKLEHTELGSGLDAMISSHETGYPKEHPQFWQTLFKQFALVPEHCLFIDDSEPILNAAR LAGVGHQLGISNPDSQKPAKTFNDFPAISDYRVLLNDLTS