Protein Info for SO0139 in Shewanella oneidensis MR-1
Name: ftn
Annotation: ferritin (NCBI ptt file)
These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.
Protein Families and Features
Best Hits
Swiss-Prot: 63% identical to FTN1_HAEIN: Probable bacterial non-heme ferritin (ftnA) from Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
KEGG orthology group: K02217, ferritin [EC: 1.16.3.1] (inferred from 100% identity to son:SO_0139)MetaCyc: 63% identical to ferritin iron storage protein (Escherichia coli K-12 substr. MG1655)
RXN-15294 [EC: 1.16.3.2]
Predicted SEED Role
"Ferritin-like protein 2"
KEGG Metabolic Maps
Isozymes
Compare fitness of predicted isozymes for: 1.16.3.1
Use Curated BLAST to search for 1.16.3.1 or 1.16.3.2
Sequence Analysis Tools
PaperBLAST (search for papers about homologs of this protein)
Search CDD (the Conserved Domains Database, which includes COG and superfam)
Predict protein localization: PSORTb (Gram-negative bacteria)
Predict transmembrane helices and signal peptides: Phobius
Check the current SEED with FIGfam search
Find homologs in fast.genomics or the ENIGMA genome browser
See Q8EKF4 at UniProt or InterPro
Protein Sequence (178 amino acids)
>SO0139 ferritin (NCBI ptt file) (Shewanella oneidensis MR-1) MLSATMIEKLNEQINMEFFSSNLYLQMSAWCEDQGFEGAAKFMREHADEEMGHMRRLFTY VSETGGLPLLGAIEAPQSQFNSLLALFELTYEHEQLITRQINALAHTAFSNQDYSTFNFL QWYVAEQHEEEKLFKSIVDKIRLVGEDGKALFFIDKDLAKLASKGGESIMNAQSQPQA