Protein Info for SO0110 in Shewanella oneidensis MR-1

Annotation: hypothetical protease (NCBI ptt file)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 447 transmembrane" amino acids 25 to 44 (20 residues), see Phobius details amino acids 49 to 71 (23 residues), see Phobius details amino acids 165 to 182 (18 residues), see Phobius details amino acids 285 to 306 (22 residues), see Phobius details PF01435: Peptidase_M48" amino acids 81 to 162 (82 residues), 42.2 bits, see alignment E=8.3e-15 PF00114: Pilin" amino acids 366 to 446 (81 residues), 23.1 bits, see alignment E=1.2e-08

Best Hits

KEGG orthology group: None (inferred from 100% identity to son:SO_0110)

Predicted SEED Role

"Zn-dependent protease"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q8EKI3 at UniProt or InterPro

Protein Sequence (447 amino acids)

>SO0110 hypothetical protease (NCBI ptt file) (Shewanella oneidensis MR-1)
MEQVVNTGNDNPIQMADTVYSKEKTLFTILAIISGLIWAVLIIATKGLALIYVLMFFIIY
LFTHSAFISYLKGTAVEISPEQFPDLHKQYLACCKRLEIKEAPRAYLLAADGMLNALATR
FLRRNYIVLFSSIVDALESDKDAINFYIGHELGHIRRNHIGKEPLLVFATWLPLIGAAYA
RACEYTCDLHGLRCCNSLRSATNAVAVLAAGVEQWKRMNVDQYIRQTQESSGFWMSFHEL
NSSYPWLTKRMARVRAKAQGKDYSAPSRSVFAYIISLFTPRMGTAGGGIIILAAIIGVAA
AVAIPAYKEYQEKVGAASINYDDANNSSSTPQMDTEPASVPDAALAIEHIDQLHQSLVPI
TDVLTKYYQNTKGWPTELEVLGLTDEQLSTFNLYTDGIVGFVTGEALGDYQGYEVYLSPQ
VDEQDNVTWVCSSNGIPDEYLPADCQG