Protein Info for Rru_A3699 in Rhodospirillum rubrum S1H

Annotation: Acriflavin resistance protein (NCBI)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1029 transmembrane" amino acids 12 to 30 (19 residues), see Phobius details amino acids 334 to 353 (20 residues), see Phobius details amino acids 360 to 382 (23 residues), see Phobius details amino acids 387 to 410 (24 residues), see Phobius details amino acids 431 to 451 (21 residues), see Phobius details amino acids 463 to 482 (20 residues), see Phobius details amino acids 526 to 546 (21 residues), see Phobius details amino acids 847 to 867 (21 residues), see Phobius details amino acids 874 to 894 (21 residues), see Phobius details amino acids 900 to 921 (22 residues), see Phobius details amino acids 950 to 970 (21 residues), see Phobius details amino acids 978 to 1004 (27 residues), see Phobius details PF00873: ACR_tran" amino acids 5 to 1004 (1000 residues), 911.2 bits, see alignment E=1.2e-277 PF03176: MMPL" amino acids 306 to 486 (181 residues), 27.2 bits, see alignment E=2.9e-10 PF02355: SecD_SecF_C" amino acids 851 to 1005 (155 residues), 20.9 bits, see alignment E=3e-08

Best Hits

KEGG orthology group: None (inferred from 100% identity to rru:Rru_A3699)

Predicted SEED Role

"RND multidrug efflux transporter; Acriflavin resistance protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q2RN02 at UniProt or InterPro

Protein Sequence (1029 amino acids)

>Rru_A3699 Acriflavin resistance protein (NCBI) (Rhodospirillum rubrum S1H)
MKAFDLFIRRPVLATVISLLILVVGFQALMRLPIRQYPEMSNTVITVTTTYPGANSDLIQ
GFVTQPIQKAVSTSKGLDYLTSSSSQGVSTVKAFVRLNEDPDAAMTEVTAKVNEVRSLLP
RNVDNPVISKETGETFPAAFIAFSSKSHSQEQITDYVNRVIQPKLAAVSGVSNPEVFGAK
NFSIRVWLDPEKMAQQGLTASDVQTALTANNFSSAAGSIKGSLDIINTKAETDLTDIAEF
RKLVVRNDGARLIRLQDIGEVSLAAESSDMSVFASGQAAIFVGVFTTPEANPLSVIAEIR
ETALPAIIDQLPEGMTALMAYDSTVFITESIREVVKTIVEAAIIVMVVIFLFMGSVRSVV
IPLVTVPLSLVGVAILLMVLGFSINLLTLLAMVLAIGLVVDDAIVVVENVHRHIEEGSTP
FQAAIDGTREIALPVISMTITLAAVYAPIAFMGGLTGALFREFALALAGSVVVSGVVALT
LSPMMCSKILRHEVTKKGFAAKLDSLFERLQGRYGRLLDASLADRPTTVVFALIVMGSLY
FLFSAIPSELAPDEDQGAVLTAFNGPASASNDYMNVFVHQIDDALRAYPETEHTFLIAGI
GTPNSGFGGASLKPWAERERDAKALIGAVQTTMNGIAGVKASVFSPAALPGADGLPVQFV
ISSTTPYEAISDIQDEMMKRAQASGRFIFTDTDLKFESPQTVVSVDRDKAAAYGITMDQI
GGALATMTGGNYVNLVNIQGRSYKVIPQVPDSARMDPDSLGRFYIRTHSGTAIPLSSLVT
LERRVLPQSLNQFNQLNAFTISGFPMPGVTLGQALAVLEQSAAEVLPSGYTIDYAGQSRQ
FIQEGSSLIGTFVFALIIIFLVLAAQFESFRDPLVIMISVPLSICGALLPLALGATTMNI
YTQVGLVTLIGLITKHGILMCEVARERQEEQGLTRAQAIEVAAKLRLRPILMTTAAMVAG
LIPLMFASGAGANSRFSIAVVIVAGMSIGTLFTLFVLPVIYTFLAEDRSKGRDGSSGAEG
GVSLSKAAE