Protein Info for Rru_A3659 in Rhodospirillum rubrum S1H

Annotation: hypothetical protein (NCBI)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 534 signal peptide" amino acids 1 to 21 (21 residues), see Phobius details transmembrane" amino acids 30 to 51 (22 residues), see Phobius details amino acids 62 to 85 (24 residues), see Phobius details amino acids 97 to 117 (21 residues), see Phobius details amino acids 138 to 165 (28 residues), see Phobius details amino acids 178 to 208 (31 residues), see Phobius details amino acids 220 to 240 (21 residues), see Phobius details amino acids 260 to 291 (32 residues), see Phobius details amino acids 312 to 335 (24 residues), see Phobius details amino acids 341 to 359 (19 residues), see Phobius details amino acids 371 to 392 (22 residues), see Phobius details PF13231: PMT_2" amino acids 77 to 233 (157 residues), 55.7 bits, see alignment E=3.8e-19

Best Hits

KEGG orthology group: None (inferred from 100% identity to rru:Rru_A3659)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q2RN42 at UniProt or InterPro

Protein Sequence (534 amino acids)

>Rru_A3659 hypothetical protein (NCBI) (Rhodospirillum rubrum S1H)
MSRRRRGPGFTGALARPALAVDRGLLGHPWRLLVLLGVYLALIAAFQAVFWTGGRNDDAE
LLLHGQTLALVYDALNPPLMGWLAWAAETLFGPSLASLRGLIAVIVLLAYGATLLVARQI
TADPRVQALCLLAPATLLHTAFYVFINLSHSLLLLLVAIATVWAALETARQPTARRYLVL
GGIVGLGLLTKYNYALVLVAVIGAGLMVEPTRRALLDRRLLLSALAALAVAGPATAAHFL
DPQGFLALYRAKMGVETPTLWISGVLSGFGGLAQHGFDMLMPGAVLALMVFHRRFVRRSG
PTLAAQTPERWPLAFAALCPLLYVGLFAALVLLGLATRIDAHHLFFLAFALVPLIAWLAD
SPQVGGGARGLFGLIALGLCVVSALALGQFTWKTATTCTGKCGIVLPYETWAKDLKAAGF
TRGTVLQLSPVHSLPLVNLRPWLADSRFLRPLDAQAGGFVPPLHSEGGDCLILDAADAPS
LADPGALFARLGLPAAAPEGWHGGRLEGATLALSGRPAPPLGYLLIPGGLGSCR