Protein Info for Rru_A3483 in Rhodospirillum rubrum S1H

Annotation: Major facilitator superfamily MFS_1 (NCBI)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 544 transmembrane" amino acids 22 to 43 (22 residues), see Phobius details amino acids 62 to 79 (18 residues), see Phobius details amino acids 90 to 111 (22 residues), see Phobius details amino acids 117 to 137 (21 residues), see Phobius details amino acids 147 to 168 (22 residues), see Phobius details amino acids 180 to 203 (24 residues), see Phobius details amino acids 215 to 238 (24 residues), see Phobius details amino acids 244 to 263 (20 residues), see Phobius details amino acids 281 to 301 (21 residues), see Phobius details amino acids 318 to 338 (21 residues), see Phobius details amino acids 345 to 366 (22 residues), see Phobius details amino acids 373 to 392 (20 residues), see Phobius details amino acids 405 to 429 (25 residues), see Phobius details amino acids 500 to 521 (22 residues), see Phobius details PF07690: MFS_1" amino acids 36 to 425 (390 residues), 35.5 bits, see alignment E=2.9e-13

Best Hits

KEGG orthology group: None (inferred from 100% identity to rru:Rru_A3483)

Predicted SEED Role

"Multidrug resistance protein B"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q2RNL8 at UniProt or InterPro

Protein Sequence (544 amino acids)

>Rru_A3483 Major facilitator superfamily MFS_1 (NCBI) (Rhodospirillum rubrum S1H)
MSGPSSPPAPPAAPPMSTGRSTIYIAASVLLWMTQGLGMNLIAVNTLQIQGSLGATLTET
SWLIAAYMAPNVSLTILLTKIRIQFGLRRFAELSLIIFAVTSLLHLVIFDLWTALPIRFL
AGMAAAPVSTLGFLYMLEAFPPAKKLTWAVSLSLTCSAATPMVARVISPVLLDLGQWQQL
YTLELGLALLAFSVVFLLPLTPLPYAKVLHWRDFITYPLVAIGFGLLAVVLALGRFYWWF
EAPWIGICLAIAALCIGGAAAVELHRDTPLLNIRWLTSPEIATLALTLLIFRIVLAEQTS
GAIGLFQTLGLLNEQSRTLYLILLAATLAGGLICGLTLTLARVPLFHGIALICIAGGAVM
DGHATALTRPETMYFSQALIAFGGALFLPPAMHSGLVKTFKQGPMFITSFIAVFLFTQSI
GGLMGSALFGSLVTLREKVHSAHLVEQIQLTNPIVADRLHTLAGAYHPLLSDPQQLMTEG
MALLSQQVTREATVLAYNDAFLLLAAIASAFLAALGLHMAYRRLRGRLDRSRGPDALIPQ
SRPT