Protein Info for Rru_A3477 in Rhodospirillum rubrum S1H

Annotation: Major facilitator superfamily MFS_1 (NCBI)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 405 transmembrane" amino acids 15 to 35 (21 residues), see Phobius details amino acids 55 to 74 (20 residues), see Phobius details amino acids 83 to 102 (20 residues), see Phobius details amino acids 107 to 132 (26 residues), see Phobius details amino acids 140 to 165 (26 residues), see Phobius details amino acids 171 to 191 (21 residues), see Phobius details amino acids 223 to 244 (22 residues), see Phobius details amino acids 252 to 273 (22 residues), see Phobius details amino acids 285 to 304 (20 residues), see Phobius details amino acids 309 to 332 (24 residues), see Phobius details amino acids 344 to 364 (21 residues), see Phobius details amino acids 370 to 388 (19 residues), see Phobius details PF07690: MFS_1" amino acids 24 to 312 (289 residues), 96.4 bits, see alignment E=8.6e-32

Best Hits

KEGG orthology group: None (inferred from 100% identity to rru:Rru_A3477)

Predicted SEED Role

"putative transport protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q2RNM4 at UniProt or InterPro

Protein Sequence (405 amino acids)

>Rru_A3477 Major facilitator superfamily MFS_1 (NCBI) (Rhodospirillum rubrum S1H)
MSEPAVFPSPRPALGRGATFAMAAAAGLAVANIYYNQPMLGLIEDAFPGSASPGLIPTVT
QLGYALGLFLLVPLGDLVDRRRLIIGQFLALAATLCLTALAPTAGVLVGASLLVGAGATV
AQHIVPFAAALAPDGQRGRIIGTVMGGLLCGILLSRTLAGVVATHLGWREMFWLGVPLVL
AAAGLMAAVLPRRVVPPQGLRYGQALRSLAHLWRDEPALRRATLTQAALFGSFSVFWTVL
ALHLQEPALGLGADVAGLFGVIGAVGVVAAPLAGRLADHRGPGPVIVLGASLVLVSWAIV
ALWASVLGLVVGVIALDLGTQSALVSNQHVVYALRPEARSRLNTVFMSGMFLGGAGGSAG
ATLAWSLGGWAAVSGYGAGLAILALGILRLGRPIRSECAAAAATD