Protein Info for Rru_A3448 in Rhodospirillum rubrum S1H
Annotation: Uncharacterized P-loop ATPase protein UPF0042 (NCBI)
These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.
Protein Families and Features
Best Hits
Swiss-Prot: 100% identical to Y3448_RHORT: Nucleotide-binding protein Rru_A3448 (Rru_A3448) from Rhodospirillum rubrum (strain ATCC 11170 / ATH 1.1.1 / DSM 467 / LMG 4362 / NCIB 8255 / S1)
KEGG orthology group: K06958, UPF0042 nucleotide-binding protein (inferred from 100% identity to rru:Rru_A3448)Predicted SEED Role
"FIG000506: Predicted P-loop-containing kinase"
Sequence Analysis Tools
PaperBLAST (search for papers about homologs of this protein)
Search CDD (the Conserved Domains Database, which includes COG and superfam)
Predict protein localization: PSORTb (Gram-negative bacteria)
Predict transmembrane helices and signal peptides: Phobius
Check the current SEED with FIGfam search
Find homologs in fast.genomics or the ENIGMA genome browser
See Q2RNQ3 at UniProt or InterPro
Protein Sequence (338 amino acids)
>Rru_A3448 Uncharacterized P-loop ATPase protein UPF0042 (NCBI) (Rhodospirillum rubrum S1H) MKPRALRPPLGRQTPRDGPLGRSASLLRLRDPAPLPTDIAPDPAEAPPSPAADRRVIVVT GMSGAGRTTVLRALEDIGYEAVDNLPLSLFEALTQGRWDQPRPLVLGIDTRTRGFHAATV LAAIERLVAATGFDVRLLFIDCDDEVLVRRYTETRRRHPLAVDRPLADGIALERALVAPL KERASRCLDTSILPPAKLRAVIEAEFSLDHRPELAIFVSSFGFRNGLPREADLVFDVRFL ANPHYEPHLREMTGLDPAVAAYVAADPDFAPLIDRVTALLALLVPRYEKEGKSYLTIAIG CTGGKHRSVYTAERLAAWLNETGRRAHVRHRDLKETPR