Protein Info for Rru_A3355 in Rhodospirillum rubrum S1H

Annotation: Uncharacterized conserved protein UCP006173 (NCBI)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 132 PF03692: CxxCxxCC" amino acids 10 to 78 (69 residues), 45.8 bits, see alignment E=4e-16

Best Hits

Swiss-Prot: 59% identical to Y1358_NITOC: UPF0260 protein Noc_1358 (Noc_1358) from Nitrosococcus oceani (strain ATCC 19707 / BCRC 17464 / NCIMB 11848 / C-107)

KEGG orthology group: K09160, hypothetical protein (inferred from 100% identity to rru:Rru_A3355)

Predicted SEED Role

"conserved protein of unknown function; putative YcgN protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q2RNZ6 at UniProt or InterPro

Protein Sequence (132 amino acids)

>Rru_A3355 Uncharacterized conserved protein UCP006173 (NCBI) (Rhodospirillum rubrum S1H)
MTEAEWESLCDGCGKCCLHKLQEEDTGRIHHTNVACLLLDLHSCRCSSYETRWDTVPDCV
KLIPKLVSRLKWMPETCAYRLLAAGQPLPPWHPLETGDPESVHRAGMSARGRSISEVEAG
PIEDYIVEWGDL