Protein Info for Rru_A3347 in Rhodospirillum rubrum S1H

Annotation: Glycosyl transferase, group 1 (NCBI)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 PF13439: Glyco_transf_4" amino acids 81 to 194 (114 residues), 35.8 bits, see alignment E=2.1e-12 PF00534: Glycos_transf_1" amino acids 211 to 367 (157 residues), 99.7 bits, see alignment E=3.5e-32 PF13692: Glyco_trans_1_4" amino acids 220 to 356 (137 residues), 87.2 bits, see alignment E=3.1e-28 PF20706: GT4-conflict" amino acids 276 to 332 (57 residues), 27.2 bits, see alignment 4.7e-10 PF13524: Glyco_trans_1_2" amino acids 301 to 385 (85 residues), 37.5 bits, see alignment E=5.7e-13

Best Hits

KEGG orthology group: None (inferred from 100% identity to rru:Rru_A3347)

Predicted SEED Role

"glycosyltransferase"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q2RP04 at UniProt or InterPro

Protein Sequence (400 amino acids)

>Rru_A3347 Glycosyl transferase, group 1 (NCBI) (Rhodospirillum rubrum S1H)
MDDGTRLGQADHAAGPRPPGVIFTMRYPSDVGFVWKTIALHRDLIARAFGGEARCILAYP
QLSPTSAYQPRWSTAIQADFYDYSAENRQRLERVITDEAIRLVVFMSAQPADVDLGFLRG
LGLRTVTSENNSYDHSLRQPFMKRLAKALIRRVLKRQVFDLHIANSQAQYDFLRGFAQLP
ASRLRAVRNGVDTDHFQPGERTGACSTLGLDPDRLWIMAASQARPEKRLERVLEVIRAVK
DARPALPIGFFFVGEGENLAEWRQIALGLPDAETYRFFGRQNDLRPYYQAASVFIHGAFR
ESFGLVIAEAMASGLPVVATHAHGPAEIIAEGETGRLVGRDDWEGLGKAVIEYLDDAELR
RTHGLAGRARCVALFSITRQAQEFADLLRPFLKDGAGAPY