Protein Info for Rru_A3334 in Rhodospirillum rubrum S1H

Annotation: Putative ammonia monooxygenase (NCBI)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 362 signal peptide" amino acids 1 to 29 (29 residues), see Phobius details transmembrane" amino acids 38 to 59 (22 residues), see Phobius details amino acids 68 to 89 (22 residues), see Phobius details amino acids 95 to 116 (22 residues), see Phobius details amino acids 158 to 176 (19 residues), see Phobius details amino acids 192 to 212 (21 residues), see Phobius details amino acids 219 to 238 (20 residues), see Phobius details amino acids 244 to 264 (21 residues), see Phobius details amino acids 274 to 295 (22 residues), see Phobius details amino acids 329 to 353 (25 residues), see Phobius details TIGR03082: membrane protein AbrB duplication" amino acids 20 to 175 (156 residues), 143.1 bits, see alignment E=3.2e-46 amino acids 197 to 352 (156 residues), 142.4 bits, see alignment E=5.1e-46 PF05145: AbrB" amino acids 43 to 352 (310 residues), 324.6 bits, see alignment E=2.9e-101

Best Hits

KEGG orthology group: K07120, (no description) (inferred from 100% identity to rru:Rru_A3334)

Predicted SEED Role

"Putative transport protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q2RP17 at UniProt or InterPro

Protein Sequence (362 amino acids)

>Rru_A3334 Putative ammonia monooxygenase (NCBI) (Rhodospirillum rubrum S1H)
MPLPVSPSSRLGSLPIPLQWLALGATSAAVGWGLHTTGLPAALLLGPMIAAICCALAGTR
IHLPRAPYLGAQAMIGCMIGGSISPGLIASFLDDWALFLAIVLATVAASSLLGWMMSRWG
SLPGTTSVWGSSPGAASAMVVMAEAFGADVRLVAFMQYLRVVCVASAAALIAHLWVEGAP
PPPTPWFPALDGLVFGQTLALAGIGATLGVFLRVPSGAMVVPMVAAAVLSSFGLLAIHLP
PWLLALAYAALGWTIGLGFTRAVLAHAARALPQILASIAALMAFCGGTAWLLTSLLGVDP
VTAYLATSPGGLDSVAIIAASSARVDLSFVMALQTARFIIVICLGPPLARFIAGRIGDKP
LA