Protein Info for Rru_A3216 in Rhodospirillum rubrum S1H

Annotation: hypothetical protein (NCBI)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1099 transmembrane" amino acids 136 to 158 (23 residues), see Phobius details amino acids 173 to 193 (21 residues), see Phobius details

Best Hits

KEGG orthology group: None (inferred from 100% identity to rru:Rru_A3216)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q2RPD4 at UniProt or InterPro

Protein Sequence (1099 amino acids)

>Rru_A3216 hypothetical protein (NCBI) (Rhodospirillum rubrum S1H)
MSDSTQTSQPLAGTDTPPQDPPGGTPIVESPKPPAKSADEAPGGPRGGTPGDLRGGTSGD
PKGGTAAERSAHPPLPLGILPTAGGTDDGDGTAENTERSFTLPATTERGERAGRGERGAR
RPRSERLRRKHRLGSTLIWVAGLGTVFWLGVFAVYVGATVGIENILLYQPLEIGGMVSGA
LVPILLLWLAVAFHDRAAKFGEEAEILRHYLEQLAYPDDAAVDRVGQITQALVAQATALN
EASRTAVARGLAMRDDLRRETEAMESTAARIAADATQLSSGLDRRIEGLTLAYTKAGDQG
RELETLLDRLQGQFTQTVRKTGDEARAFRDALTDDLVHLDTLIQRSAEQTRMLAGLGQSI
ERMLDDSEGVAGSIERRADTLKILYGDQNRALARASEQLSDEAARIAETLGKQSATLAQV
TESMVSRVRLVDETLTLQGRNLAETSDAALGRLKAVDGLLSKRTEELTGIVEEVLGRLDE
TTDAFTQRSRDLATAGEEASRGMDGAAETAGNALKAMGLAMGKVQEKSKGVAELVIGHAE
TLDRLAGQTATQTESIRSGLKGQTDDLMGVLTSVRSHIDLASAAMGKQARDLNATAEGVV
SALKDVSGLVHTSGGELAQTATRVTVDLEAAASTLRRNATELGQAGKGTVDSLRNAGVTL
VEQASLVKDAAAIAGKAIAEADGAMRGRASAVSEAGLTVEKTLSVAAEKFNIQAGALDRV
LASSRQGLETALSDLGRQTSEMGKSAETAARRIVALSEAMGRAGGDFDERAARGVALVTQ
AADRLGEVVQEVSTNAERVTGAVRAAASEFRREVGDVSDGSKAALRPIRDSLSALRRETE
QLSSVAANAAENALGPYRSALASLRGETEQLGLLGGNAVEVIVTPFREALATLRSDTDAL
ANDGKAAAEGAIAPFREALAGLRRDTETLTSAGRVLAEATHKTSGAFVKQTEGLIAASHE
AEKRLREMKSLEDDLDIESFLNSSTYVIEKLDSLAVDITRLFAPAREEDLWRRYHKGDQG
VFLRHLARAITPAHAEAIRLATTKDKSFRDYVSSYVSEYESLLETTRKSPRADVLTALFI
GSDLGKVYMVLAKALGRLE