Protein Info for Rru_A3182 in Rhodospirillum rubrum S1H

Annotation: Auxin Efflux Carrier (NCBI)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 308 transmembrane" amino acids 6 to 24 (19 residues), see Phobius details amino acids 37 to 55 (19 residues), see Phobius details amino acids 61 to 83 (23 residues), see Phobius details amino acids 104 to 122 (19 residues), see Phobius details amino acids 127 to 149 (23 residues), see Phobius details amino acids 168 to 188 (21 residues), see Phobius details amino acids 195 to 218 (24 residues), see Phobius details amino acids 227 to 249 (23 residues), see Phobius details amino acids 255 to 275 (21 residues), see Phobius details amino acids 283 to 307 (25 residues), see Phobius details PF03547: Mem_trans" amino acids 162 to 303 (142 residues), 35.8 bits, see alignment E=1.8e-13

Best Hits

KEGG orthology group: K07088, (no description) (inferred from 100% identity to rru:Rru_A3182)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q2RPG8 at UniProt or InterPro

Protein Sequence (308 amino acids)

>Rru_A3182 Auxin Efflux Carrier (NCBI) (Rhodospirillum rubrum S1H)
MVETLGAIAPVFLIILVGFLLRRWKVLSDGFWLPAEKLTYFITFPALLAANLAGADLRGV
AWAPVAAVSVGGIFLIAALMLAARSLLARRLAIGDPAFTSVFQGAIRPNTYIGLALATVL
FGPFGVTLMALCIAIVVPLVNVLAVACMVRFGHGQSASLSAMARGIATNPLILACLVGIA
MNIGGLGLPPVLGPALTILGSAALPIGLLAVGAGLSGVGLRRAAPALLVSSAAKLVLLPG
LTLIGALALGMDAPTTALCVLYAALPCSQSSYVLARQMGGDATLMATAITVQTLLSGLSI
PVFVLALV