Protein Info for Rru_A3160 in Rhodospirillum rubrum S1H

Annotation: Protein of unknown function DUF6, transmembrane (NCBI)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 302 signal peptide" amino acids 1 to 28 (28 residues), see Phobius details transmembrane" amino acids 43 to 60 (18 residues), see Phobius details amino acids 72 to 92 (21 residues), see Phobius details amino acids 99 to 120 (22 residues), see Phobius details amino acids 130 to 149 (20 residues), see Phobius details amino acids 157 to 178 (22 residues), see Phobius details amino acids 190 to 209 (20 residues), see Phobius details amino acids 220 to 241 (22 residues), see Phobius details amino acids 251 to 270 (20 residues), see Phobius details amino acids 276 to 293 (18 residues), see Phobius details PF00892: EamA" amino acids 12 to 144 (133 residues), 56.9 bits, see alignment E=1.4e-19 amino acids 156 to 293 (138 residues), 59.4 bits, see alignment E=2.4e-20

Best Hits

KEGG orthology group: None (inferred from 100% identity to rru:Rru_A3160)

Predicted SEED Role

"Permease of the drug/metabolite transporter (DMT) superfamily" in subsystem Queuosine-Archaeosine Biosynthesis

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q2RPJ0 at UniProt or InterPro

Protein Sequence (302 amino acids)

>Rru_A3160 Protein of unknown function DUF6, transmembrane (NCBI) (Rhodospirillum rubrum S1H)
MRSRQTALDGLAMSLLVVLCASWGVQQVAIKVASAGISPMFQAGLRSAGALGLLWAWSAA
RGVPILARDGSLGLGLVIGLLFGGEILFIYWGLSYTTAARSVLFLYTAPFFVALGAHVFL
PGERLRRTDILGLACAFAGVLAVVADGLTLPDRRAMIGDAMVLLAAILWAATTVVIKASP
LAGLSANKTLVYQLGVSAVLLLGLSAGLGEAGLFDPTPRVLAAMAYQTIGVAFASYLVWF
WMITRYPASKLSAFSFLTPVFGVLAGAVMLGERVSSGLALAMGLIGFGIFLINRPERRET
VA