Protein Info for Rru_A3127 in Rhodospirillum rubrum S1H

Annotation: Pyridoxamine 5'-phosphate oxidase-related, FMN-binding (NCBI)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 211 TIGR04025: pyridoxamine 5'-phosphate oxidase, FMN-binding family" amino acids 16 to 211 (196 residues), 192.2 bits, see alignment E=2.9e-61 PF01243: PNPOx_N" amino acids 37 to 156 (120 residues), 58.1 bits, see alignment E=6.1e-20

Best Hits

KEGG orthology group: K07006, (no description) (inferred from 100% identity to rru:Rru_A3127)

Predicted SEED Role

"Phosphohydrolase (MutT/nudix family protein)"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q2RPM3 at UniProt or InterPro

Protein Sequence (211 amino acids)

>Rru_A3127 Pyridoxamine 5'-phosphate oxidase-related, FMN-binding (NCBI) (Rhodospirillum rubrum S1H)
MAIPDETGQGPSDTPNLDELYAQPSEMIQKAVLDHLVEAHAAYLKVATFFCLATAGGAGL
DASPRGGPPGFVKMIDAHRVVFADWPGNNRIESMRNLDQDDRVGMLFLFPGLDVFLRING
RARLTTEPALLASLAEGNRPPKVATVVHVTEVLFHCGKAAHRAHLWDGPSKIGPGVVPTV
GAVMASFRLLGEAQVAQVDAAYAQAVRTELY