Protein Info for Rru_A3097 in Rhodospirillum rubrum S1H

Annotation: hypothetical protein (NCBI)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 900 933 signal peptide" amino acids 1 to 25 (25 residues), see Phobius details TIGR02917: putative PEP-CTERM system TPR-repeat lipoprotein" amino acids 11 to 913 (903 residues), 456.3 bits, see alignment E=9.3e-141 PF13432: TPR_16" amino acids 209 to 270 (62 residues), 28.7 bits, see alignment 1.3e-09 amino acids 245 to 292 (48 residues), 17.1 bits, see alignment 5.4e-06 amino acids 489 to 544 (56 residues), 28 bits, see alignment 2.1e-09 amino acids 568 to 611 (44 residues), 21.5 bits, see alignment 2.2e-07 amino acids 610 to 645 (36 residues), 17.4 bits, see alignment (E = 4.3e-06) amino acids 789 to 837 (49 residues), 16 bits, see alignment 1.1e-05 PF14559: TPR_19" amino acids 214 to 272 (59 residues), 37.3 bits, see alignment 2.4e-12 amino acids 490 to 553 (64 residues), 28.2 bits, see alignment 1.6e-09 PF07721: TPR_4" amino acids 240 to 261 (22 residues), 10.1 bits, see alignment (E = 0.001) PF13181: TPR_8" amino acids 649 to 679 (31 residues), 12.4 bits, see alignment (E = 0.00014) PF09976: TPR_21" amino acids 762 to 871 (110 residues), 26.4 bits, see alignment E=4.6e-09

Best Hits

KEGG orthology group: None (inferred from 100% identity to rru:Rru_A3097)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q2RPQ3 at UniProt or InterPro

Protein Sequence (933 amino acids)

>Rru_A3097 hypothetical protein (NCBI) (Rhodospirillum rubrum S1H)
MARSLKRFWSTTSALALVLALAACNDEAKDKARASAKAYDSAITAWRAGDQKAALIHVSN
ALKAAPDNRDAKILMGEITLSGGDVWSGEKLLKEVRDGGAPAETWLRPLAKSLILQQKFD
EALTLARSIPETELVGAVKTIEGLALFGKGQDGAARLALDKALDIDPADKDALIGAAQIE
TMAGHQDAARALLARAAAAAPDDVDVLVAQADTALSANDPAAAEGLFSQAAARLPLNPLI
RLSLAQAQIEAGKNAEARQTLNTVLADIPAHPWALYLRGLTAYRTNDMTAADKDLTAALA
LAKTLRPAIFLAGVVKYNIGEYEQASRLLAGLTETEGKSNKTADAVRAAALLKLGRDDES
YRLLRPLAAGDGETADLYAMAAVAAQGAAAMADSEGYYQKAVVLRPDDPALLTNLGIVKL
ARGDTTAGEDTLNRAAELEGDDKKALLLLFSSLLQKKDFDKAEALAGDTKRKYPDRAWGW
TMDGMIQASRGDTAMARAAFETAVRKEPTAGDAVRNLALTALQSGDTEGARGVVEGYLRT
NAGDSAMAMIAAAVANKRNDLVAVEKWLRQALERDPANMEAASNLASLLTSTSRPQAAII
VAQDALRISPDTPAVMEALGKAQLLIGDYTAAADVLRRAVAIKPSGLTYYLLATAYLNLN
DPPRLKEALESVVKLQPDHVDSRVMLATMIVDGGSLSDAKTAVEGVTTDFPGDPRAQEVR
ARYLAKAEGPASAITFLEASLTDPNTRPRNLVMLLASAYNEKGDGAKASSLLEDWVAKNP
DDYPGRLSLATQQIAANQLEKAKTTLEKGLERVPNDWIARNNLAEVMLRLGQTSAAYDQI
VIARRSGGPQPALLDTEGQILLKMGKASEAVEILRLATIDRNAPPTYGLHLAQALAAAGK
KDEAGERLRALLDKNNAFEGAEQARALLSELQG