Protein Info for Rru_A3059 in Rhodospirillum rubrum S1H

Annotation: Protein of unknown function DUF179 (NCBI)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 219 PF02622: DUF179" amino acids 48 to 206 (159 residues), 162.4 bits, see alignment E=4.4e-52

Best Hits

Swiss-Prot: 100% identical to Y3059_RHORT: UPF0301 protein Rru_A3059 (Rru_A3059) from Rhodospirillum rubrum (strain ATCC 11170 / ATH 1.1.1 / DSM 467 / LMG 4362 / NCIB 8255 / S1)

KEGG orthology group: K07735, putative transcriptional regulator (inferred from 100% identity to rru:Rru_A3059)

Predicted SEED Role

"UPF0301 protein YqgE"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q2RPU1 at UniProt or InterPro

Protein Sequence (219 amino acids)

>Rru_A3059 Protein of unknown function DUF179 (NCBI) (Rhodospirillum rubrum S1H)
MRRCGHGGDVIALPSLAEDPAPDYVAAMPTLLQKHEGYLTGHCLVAMPGMGDPRFEGTVI
YLCAHTAEGAMGIVINRELEEISFPDIVGQLGIQPTPFCDDVRVQFGGPVETGRGFVLHT
SDYQNEGTLSVDDSMALTATLDVLRAIASGDGPMRVIMALGYAGWGAGQLDGELKGNVWL
TVPADRQLVFETAVKDKYTTAMGRLGIDPRLLSENAGHA