Protein Info for Rru_A3056 in Rhodospirillum rubrum S1H

Annotation: Major facilitator superfamily MFS_1 (NCBI)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 486 transmembrane" amino acids 29 to 52 (24 residues), see Phobius details amino acids 67 to 88 (22 residues), see Phobius details amino acids 95 to 115 (21 residues), see Phobius details amino acids 121 to 142 (22 residues), see Phobius details amino acids 154 to 176 (23 residues), see Phobius details amino acids 183 to 204 (22 residues), see Phobius details amino acids 216 to 236 (21 residues), see Phobius details amino acids 242 to 260 (19 residues), see Phobius details amino acids 281 to 308 (28 residues), see Phobius details amino acids 314 to 334 (21 residues), see Phobius details amino acids 346 to 367 (22 residues), see Phobius details amino acids 373 to 398 (26 residues), see Phobius details amino acids 419 to 438 (20 residues), see Phobius details amino acids 450 to 470 (21 residues), see Phobius details PF07690: MFS_1" amino acids 35 to 423 (389 residues), 161.8 bits, see alignment E=1.1e-51

Best Hits

KEGG orthology group: None (inferred from 100% identity to rru:Rru_A3056)

Predicted SEED Role

"putative transport protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q2RPU4 at UniProt or InterPro

Protein Sequence (486 amino acids)

>Rru_A3056 Major facilitator superfamily MFS_1 (NCBI) (Rhodospirillum rubrum S1H)
MSAVPPAVPPSSPSPVPSSAPRSAPTSAALSYLVAGAFFMEALDGTVVITALPQMAASFG
AAPVDLNIGVSAYILTVAILIPASGWAAERFGARTVFALAITVFTLASILCGLSQDLWSF
VAARILQGVGGAMMVPVGRLVVLRDTQKSGLMRAIAIITWPGLVAPVLGPPIGGFLATHA
SWHWIFFLNVPLGILALILTLVLVPRGRRDSPGPFDGLGFVLSGTACFCLIYGLDLISRG
EVWTSGALCLVGLLGGFLALRHSRHHERPLIDLWAMRQRSFAVTIFGGTLFRLTLSATPF
LLALLFQLSFGMDAFASGLLVLAIFVGNLAMKLLTSPILRRFSFRATLLVNGGLNALTIF
ACALLDAATPTAVILGLLFVSGLTRSLQFTALNTLAFADVPQERMTGANTLANVAQRMSG
ALGVACGAVALRLAGAIGEGAATPLELADFRFAFVLIGVISLLGLLDVIGLRRDAGDEVR
GVIAAR