Protein Info for Rru_A2903 in Rhodospirillum rubrum S1H

Annotation: Deoxyribodipyrimidine photolyase (NCBI)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 478 PF00875: DNA_photolyase" amino acids 5 to 165 (161 residues), 162.2 bits, see alignment E=1.1e-51 PF03441: FAD_binding_7" amino acids 272 to 473 (202 residues), 295.2 bits, see alignment E=2.1e-92

Best Hits

KEGG orthology group: K01669, deoxyribodipyrimidine photo-lyase [EC: 4.1.99.3] (inferred from 100% identity to rru:Rru_A2903)

Predicted SEED Role

"Deoxyribodipyrimidine photolyase (EC 4.1.99.3)" (EC 4.1.99.3)

Isozymes

No predicted isozymes

Use Curated BLAST to search for 4.1.99.3

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q2RQ95 at UniProt or InterPro

Protein Sequence (478 amino acids)

>Rru_A2903 Deoxyribodipyrimidine photolyase (NCBI) (Rhodospirillum rubrum S1H)
MTIPVLVWFRDDLRLADNPALCAALDSGAPVIPFYLLDDSTSDGHRPLGGATRWWLGRSL
TSLAESIAQRGGRLVLRRGEALSAVPELAAETDAAALFANRLYGMDSLRDDDLFMVLRVA
GLTVRLFDSGLLHRPEAVTTKTGRPFRVFTPFWKTLSATLDPGLPLAAPDSFPPVDDPPP
ASDSLADWSLEPTTPDWAGGLRDTWQPGEAGAQARLEAFFNGPVADYASGRDRPDKPLTS
KLSPHLRFGEISPRQVWTAARHHPPGGGMDAFLRELGWREFCHHLLFQAPTMAEEPLKAE
FLAFPWTEAKEIGPALAAWQSGETGYPIVDAGMRELWHTGWMHNRVRMIAASFLIKDLLI
PWQHGERWFWDTLVDACPANNAAGWQWVAGCGADAAPFFRIFNPVTQGERFDPEGAYVRR
WLPELADLPSSLIHRPWEAPPLILRQAGVTLGKTYPPPLIDHAHARVRALEALAVVNR