Protein Info for Rru_A2874 in Rhodospirillum rubrum S1H

Annotation: FAD dependent oxidoreductase (NCBI)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 435 transmembrane" amino acids 413 to 427 (15 residues), see Phobius details PF00890: FAD_binding_2" amino acids 39 to 71 (33 residues), 26.4 bits, see alignment (E = 1e-09) PF01266: DAO" amino acids 39 to 390 (352 residues), 244.6 bits, see alignment E=5.9e-76 PF13450: NAD_binding_8" amino acids 42 to 77 (36 residues), 23.4 bits, see alignment 1.5e-08

Best Hits

KEGG orthology group: K00301, sarcosine oxidase [EC: 1.5.3.1] (inferred from 100% identity to rru:Rru_A2874)

Predicted SEED Role

"COG0665: Glycine/D-amino acid oxidases (deaminating)"

MetaCyc Pathways

KEGG Metabolic Maps

Isozymes

Compare fitness of predicted isozymes for: 1.5.3.1

Use Curated BLAST to search for 1.5.3.1

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q2RQC4 at UniProt or InterPro

Protein Sequence (435 amino acids)

>Rru_A2874 FAD dependent oxidoreductase (NCBI) (Rhodospirillum rubrum S1H)
MSGSSPTPASPSSTPPSLWAATAPSAPPTRTLAGETRADLAVIGAGVTGLSTALHAAEAG
LTVTVVEAEEAGFGGSGRNNGQVIPTLAKPDPSDLVAKWGEAGERLARMVGESAALVFDL
IDRHAIACEAVQHGWLQPAHRPSRLTVSQKRHREWTARGLDCRLVDRAETAALTGSDYWA
GGLLCPTGGHVTPLALTRGLARAAQKAGATVYTASPVTGIDRRGSDWRVATPGGAVTARA
VVIATSAYGQGVWPTLERSIVPVRNFQMSTQPLPPEVLAKVIPADVAISDTHGDLYFFRK
TADGRLVSGCTLTSRTSDPTEAKARVIARILEVFPQAGRQTIDYCWHGQLDFTPDFHPRF
YSLEPGIFAAIGYNGRGLALGVAVGRELARAAAGTPFSQLALPDGGKPRPLPFHGLITGV
APLMMHWWRHKDGRD