Protein Info for Rru_A2807 in Rhodospirillum rubrum S1H

Annotation: YHS (NCBI)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 489 transmembrane" amino acids 6 to 26 (21 residues), see Phobius details amino acids 38 to 57 (20 residues), see Phobius details amino acids 68 to 87 (20 residues), see Phobius details amino acids 94 to 114 (21 residues), see Phobius details amino acids 134 to 153 (20 residues), see Phobius details amino acids 165 to 183 (19 residues), see Phobius details amino acids 213 to 232 (20 residues), see Phobius details amino acids 267 to 285 (19 residues), see Phobius details PF10080: FtrD-like" amino acids 316 to 419 (104 residues), 108.3 bits, see alignment E=2e-35 PF04945: YHS" amino acids 427 to 472 (46 residues), 47.9 bits, see alignment 1.1e-16

Best Hits

KEGG orthology group: None (inferred from 100% identity to rru:Rru_A2807)

Predicted SEED Role

"Fe2+ ABC transporter, substrate binding protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q2RQJ1 at UniProt or InterPro

Protein Sequence (489 amino acids)

>Rru_A2807 YHS (NCBI) (Rhodospirillum rubrum S1H)
MTAYLTSLIHAFAAPAVLLGLLIALAPAEARRRVARGAGWVFAAGLAGGAVLWLALASGG
AVVEARSILRLTALALGLAVVAAALGGGRTARRALALVAAPFVGVLGGQGVFDLLARTAN
QSFTATSVINTELLLNAFALVLGSGLCATFGLASAQIAARLRRRWAVGLLAGVVLLEAVF
WLGDAMLGGLQVGTLGVTSGRISFVAKITSASGFAAYGVIVLVVLAALGLWIGGPPPSAM
SQDPSTAAHAAPERRKDRARLLTRRRWLRTAVGSAAFLGAALLYHDLYASLPPSLSPAAP
VTPDAKGQVRLAIDPLKDGALHRFAYIAGDGHRVRFFLINRYDGEHVKMGVVFDACMICG
DEGYIQKGNEIICIACNVRIFRPSIGKAGGCNPIPMRHTVENGEIVITQSELERGARYFS
EVVDIEVGDPVTKGRLINTKAPFQYEYKGHMFFFESRESYDLFRADPEKYVGNVESRSLR
VQGFQPVEG