Protein Info for Rru_A2657 in Rhodospirillum rubrum S1H

Annotation: AsmA (NCBI)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 737 transmembrane" amino acids 7 to 29 (23 residues), see Phobius details PF05170: AsmA" amino acids 1 to 189 (189 residues), 102.1 bits, see alignment E=1.8e-33 amino acids 336 to 565 (230 residues), 38.7 bits, see alignment E=2.7e-14

Best Hits

KEGG orthology group: None (inferred from 100% identity to rru:Rru_A2657)

Predicted SEED Role

"exported protein, conserved"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q2RQZ1 at UniProt or InterPro

Protein Sequence (737 amino acids)

>Rru_A2657 AsmA (NCBI) (Rhodospirillum rubrum S1H)
MVRGGTILKVVFGLAVVLVVAVVVLVATFDLNAYKGRLAAELGRLTGREVTIAGDIGLAL
SLTPTIAVEGVTLGNAAWAGSEPMVAVDRLEAKIAVVPLLSGIVSIDSLELDAPRILLAT
NAAGQGNWALTPAAKPAAQTPPAASKSEPTPEPTPDPAAAQSTAAAPVSFDIRSVTITDA
LLTYKDGKAGGPPTTLTLKSLTLLSEGAGQPLDVDLQGALGARLLGLSGKLGAIDTILAG
QPMAVDLAFETDGLSGTVKGSVAEPLKGKGLDLAVVARAADLSDLAGNSVAALPLDLSTR
ITQDGAAYRLGDLALRLGASSVSGALRIDPAAKPLAVTGVLAAPLLDLAELLPKRPALSG
GGGGAGAPGTSSGRAATVIPDTPIDVSALVGLPLRADVPITIDKLVLPNGIVLDKVALRA
RVAPGKIGPADFSTALGGGVLAGVVSLDAAGAAPSLALSLKGERIVLGALARDLGKSDLV
EEAPLRLSVDLAGSGASPHAIAQRLNGTILLDVGPGRINNALVDLIGGDVLSQVNGLINP
FAAKQSTTGLRCAVFNVPVKAGVLTWDRHLALETDRMTVASTGSVALGPETLDVGVRPRP
RDGVGLETGLGRITQLFRVSGTFAKPYVDVDVAQALTQAVGTAASLGAAAATMGGSVALG
QIAGSLLGVEEDDPAPCLTALGQKAPPKAASQATPGTPAEALRGVLDSVIGKGESGEGTT
QPAETLKNTLDGLFKRQ