Protein Info for Rru_A2633 in Rhodospirillum rubrum S1H

Annotation: ABC transporter component (NCBI)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 218 PF00005: ABC_tran" amino acids 18 to 165 (148 residues), 109.8 bits, see alignment E=1.7e-35

Best Hits

Swiss-Prot: 57% identical to Y1388_BRUA2: Putative ABC transporter ATP-binding protein BAB1_1388 (BAB1_1388) from Brucella abortus (strain 2308)

KEGG orthology group: K02006, cobalt/nickel transport system ATP-binding protein (inferred from 100% identity to rru:Rru_A2633)

Predicted SEED Role

"ATPase component NikO of energizing module of nickel ECF transporter" in subsystem ECF class transporters or Transport of Nickel and Cobalt

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q2RR15 at UniProt or InterPro

Protein Sequence (218 amino acids)

>Rru_A2633 ABC transporter component (NCBI) (Rhodospirillum rubrum S1H)
MLEVSDLRFAYPGRPAVLDGATMGLEAGERLAITGPNGAGKSTLLQILVGLLRPQGGRVW
AFGAERRVESEFYEVRRRAGYVFQDPDDQLFCPTVAEDVAFGPLNLGKTPAEARAIVDRV
LADLGLSPLRDRVTYKLSGGEKRLVSLATVLAMDPDVLLLDEPTNALDEPTTARLGDILL
GLPQAMIVISHDPSFRARVATRGLSLRAGRLISPASLG