Protein Info for Rru_A2380 in Rhodospirillum rubrum S1H

Annotation: Major facilitator superfamily MFS_1 (NCBI)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 403 signal peptide" amino acids 1 to 31 (31 residues), see Phobius details transmembrane" amino acids 46 to 68 (23 residues), see Phobius details amino acids 80 to 97 (18 residues), see Phobius details amino acids 103 to 121 (19 residues), see Phobius details amino acids 133 to 155 (23 residues), see Phobius details amino acids 167 to 189 (23 residues), see Phobius details amino acids 212 to 235 (24 residues), see Phobius details amino acids 246 to 265 (20 residues), see Phobius details amino acids 277 to 298 (22 residues), see Phobius details amino acids 304 to 325 (22 residues), see Phobius details amino acids 336 to 358 (23 residues), see Phobius details amino acids 365 to 386 (22 residues), see Phobius details PF07690: MFS_1" amino acids 29 to 232 (204 residues), 38 bits, see alignment E=4.9e-14 amino acids 227 to 384 (158 residues), 34.3 bits, see alignment E=6.4e-13

Best Hits

KEGG orthology group: K03449, MFS transporter, CP family, cyanate transporter (inferred from 100% identity to rru:Rru_A2380)

Predicted SEED Role

"putative cyanate MFS transporter"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q2RRR5 at UniProt or InterPro

Protein Sequence (403 amino acids)

>Rru_A2380 Major facilitator superfamily MFS_1 (NCBI) (Rhodospirillum rubrum S1H)
MTPSSPWHGRSLLLAGAIVLVALNLRPALSSVGPVLNEIMAGLGLSAAQASWLTTLPVLC
LGLFGPLAPRLARIVGTDRLILAMLVVLAAAIALRGAHTPLALFIGTAVGGLAIGAVNVL
LPGVLKRDYPGHAVAMTGVMTMAMCGGAAVAAGATVPLMNRLDGDWAAALAWWVVPALIA
IVAWAPFALRGKRGGKAGGVLPVVGLWRDKVAWQVTLFMGMQSSLAYCVFGWLAPILRDR
GISAVEAGLMVSVSVLCQLPTALVTPSLAGRARDQRLAVVLTQCGTAIGLMGCMLAPLSL
IWGFAVILGLAQGASFATALSLIVLRSGDSHIAAHLSGMAQGVGYSVSAMGPLLVGLIHQ
QTGSWGPVAGLFLAIGALALIAGLGAGRRRTVGARVEGHASAA